New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3809140	360 (3.620)	3 (0.030)	5/314	NT	0.83%	coding (601/1278 nt)	waaA	3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)
	?	NC_000913	= 3809156	371 (3.850)					coding (617/1278 nt)	waaA	3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase)
Rejected: Frequency below/above cutoff threshold.

ATTGCGGCGCTACATAAACGTAAAATTCCGCTGGTGATCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3808951‑3809140 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggCTACCGGTAACGGTCACCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGAGCGGGCAGAGAGTCGCGCGTTAGCGATCACCAGCGGAATTTTACGTTTATGTAGCGCCGCAATCAGGTTAGGCCATAGTTCGGTTTCCATAATCAACACCAGTTTAGGGTCGACTTTATTCAGGAAACGG  <  NC_000913/3809156‑3808884                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTGCGGCGCTACATAAACGTAAAATTCCGCTGGTGATCGCTAACGCGCGACTCCCTGCCCGCTCGGCCGCAGGTTATGCCAACCTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGTAAAATGACGAAGATGGTGCCCGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGttga                                                                                                                                                                                                                                                                                >  4:317078/1‑189                  ACGTAAAATTCCGCTGGTGATCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG                                                                                                                                                                                                                                                                                    >  2:171304/1‑172                                      TCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAAT                                                                                                                                                                                                                                                                                       <  7:328177/149‑1                                      TCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAAT                                                                                                                                                                                                                                                                                       <  5:465975/149‑1                                       CGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATC                                                                                                                                                                                                                                                                                      >  8:4816/1‑149                                        aCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCA                                                                                                                                                                                                                                                                                     >  6:260884/2‑149                                        GCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCA                                                                                                                                                                                                                                                                                     <  6:172821/149‑1                                        GCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGGCGCTTGCTGCGTCGTATTACGCTGATTGCAGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCA                                                                                                                                                                                                                                                                                     <  7:3100/149‑1                                         CTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG                                                                                                                                                                                                                                                                                    <  5:134720/149‑1                                         CTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG                                                                                                                                                                                                                                                                                    <  7:286893/149‑1                                         CTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG                                                                                                                                                                                                                                                                                    <  6:2898/149‑1                                         CTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG                                                                                                                                                                                                                                                                                    <  5:468149/149‑1                                          TAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGG                                                                                                                                                                                                                                                                                   >  6:375162/1‑149                                          TAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGG                                                                                                                                                                                                                                                                                   >  8:211663/1‑149                                                                                                                   CGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG                                                                                                                                                                                                                                                                                    >  7:433451/1‑75                                                                                                                   CGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG                                                                                                                                                                                                                                                                                    <  8:433451/75‑1                                                                                                                    GTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGGCTACCGGTAACGGTCACCTGA                                                                                                                                                                                                                                                              >  7:472095/1‑96                                                                                                                    GTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGGCTACCGGTAACGGTCACCTGA                                                                                                                                                                                                                                                              <  8:472095/96‑1                                                                                                                          CGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAG                                                                                                                                                                                                                                                                                    >  2:79309/1‑68                                                                                                                                                                                 AAAAAATAATCAGGTGACCGTTACCGGTAGCCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCT                                                                                                                                            >  6:104659/1‑149                                                                                                                                                                                       TAATCAGGTGACCGTTACCGGTAGCCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCC                                                                                                                                      >  7:465883/1‑149                                                                                                                                                                                         ATCAGGTGACCGTTACCGGTAGCCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGA                                                                                                                                    >  5:197184/1‑149                                                                                                                                                                                          taAGGCTACCGGTAACGGTACCCTGTTAATTTTTTGCGCCCAGGGCCACAAAACGTGCACCATCTTCTTCATTTTGCGAAGCAATCATCGTAAAACGACGCAGCAAGCGTCTGACGAATTTACCCATGTTGGCATAACCTGCGGCCGAGCGGGCAGAGGGTCGCGCGTTAGCGATCACCAGCGGAATTTTACGTTTATGTAGCGCCGCAATCAGGTTAGGCCATAGTTCGGTTTCCATAATCAACACCAGTTTAGGGTCGACTTTATTCAGGAAA     <  4:83023/273‑1                                                                                                                                                                                             GGCTACCGGTAACGGTCACCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGAGCGGGCAGAGAGTCGCGCGTTAGCGATCACCAGCGGAATTTTACGTTTATGTAGCGCCGCAATCAGGTTAGGCCATAGTTCGGTTTCCATAATCAACACCAGTTTAGGGTCGACTTTATTCAGGAAA     <  2:123174/272‑1                                                                                                                                                                                             GGCTACCGGTAACGGTCACCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGAGCGGGCAGAGAGTCGCGCGTTAGCGATAACCAGAGGAATTTTAGGTTTATGTAGCGCCGCAATCAGGTTAGGCCATAGTTCGGTTTCCATAATCAACACCAGTTTAGGGTAGCATTTATTCAGGAAACGG  >  1:151103/1‑275                                                                                                                                                                                             GGCTAACGGTAACGGTCACCTGATTATTTTTTGCGCCCGGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGAGCGGGCAGAGAGTCGCGCGTTAGCGATCACCAGCGGAATTTTACGTTTATGTAGCGCCGCAATCAGGTTAGGCCATAGTTCGGTTTCCATAATCAACACCAGTTTAGGGTCGACTTTATTCAGGAAACG   <  1:46855/274‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTGCGGCGCTACATAAACGTAAAATTCCGCTGGTGATCGCTAACGCGCGACTCTCTGCCCGCTCGGCCGCAGGTTATGCCAAACTGGGTAAATTCGTCCGTCGCTTGCTGCGTCGTATTACGCTGATTGCTGCGCAAAATGAAGAAGATGGTGCACGTTTTGTGGCGCTGGGCGCAAAAAATAATCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3808951‑3809140 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggCTACCGGTAACGGTCACCTGATTATTTTTTGCGCCCAGCGCCACAAAACGTGCACCATCTTCTTCATTTTGCGCAGCAATCAGCGTAATACGACGCAGCAAGCGACGGACGAATTTACCCAGTTTGGCATAACCTGCGGCCGAGCGGGCAGAGAGTCGCGCGTTAGCGATCACCAGCGGAATTTTACGTTTATGTAGCGCCGCAATCAGGTTAGGCCATAGTTCGGTTTCCATAATCAACACCAGTTTAGGGTCGACTTTATTCAGGAAACGG  <  NC_000913/3809156‑3808884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.