mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4094379 = | 21 (0.410) | 4 (0.080) | 3/242 | NT | 17.8% | noncoding (64/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094606 = | 17 (0.350) | noncoding (291/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | 4094379 = | 21 (0.410) | 4 (0.090) | 3/224 | NT | 18.4% | noncoding (64/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 4094422 = | 17 (0.380) | noncoding (107/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | = 3809140 | 143 (2.800) | 3 (0.060) | 5/244 | NT | 2.0% | coding (601/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| ? | NC_000913 | = 3809156 | 153 (3.120) | coding (617/1278 nt) | waaA | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) | |||||
| * | ? | NC_000913 | = 3795026 | 154 (3.010) | 7 (0.150) | 6/238 | NT | 4.5% | coding (98/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_000913 | = 3795059 | 150 (3.130) | coding (131/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | NC_000913 | = 3784820 | 229 (4.480) | 5 (0.100) | 5/242 | NT | 2.2% | coding (196/432 nt) | yibN | putative rhodanese‑related sulfurtransferase |
| ? | NC_000913 | = 3784836 | 225 (4.620) | coding (180/432 nt) | yibN | putative rhodanese‑related sulfurtransferase | |||||
| * | ? | NC_000913 | 3770639 = | 160 (3.130) | 7 (0.140) | 7/240 | NT | 4.6% | coding (741/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump |
| ? | NC_000913 | 3770662 = | 138 (2.860) | coding (718/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||
| * | ? | NC_000913 | 3761270 = | 232 (4.540) | 6 (0.120) | 5/244 | NT | 2.7% | intergenic (‑21/+77) | selA/yibF | selenocysteine synthase/glutathione S‑transferase homolog |
| ? | NC_000913 | 3761292 = | 210 (4.280) | intergenic (‑43/+55) | selA/yibF | selenocysteine synthase/glutathione S‑transferase homolog | |||||
| * | ? | NC_000913 | = 3736798 | 198 (3.870) | 3 (0.060) | 3/242 | NT | 1.6% | coding (380/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736838 | 181 (3.720) | coding (340/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | = 191913 | 77 (1.510) | 4 (0.080) | 3/242 | NT | 5.1% | coding (59/726 nt) | pyrH | uridylate kinase |
| ? | NC_000913 | = 191930 | 74 (1.520) | coding (76/726 nt) | pyrH | uridylate kinase | |||||