mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 46 (0.330) | 7 (0.050) | 7/492 | 11.0 | 9.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 90 (0.670) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 7 (0.050) | 7/492 | 11.0 | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 49 (0.350) | 6 (0.040) | 6/492 | 11.5 | 8.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 90 (0.670) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1616905 | 109 (0.790) | 7 (0.050) | 6/490 | 11.5 | 6.4% | intergenic (+27/‑123) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible |
| ? | NC_000913 | = 1616917 | 99 (0.740) | intergenic (+39/‑111) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible | |||||
| * | ? | NC_000913 | = 66613 | 107 (0.770) | 3 (0.030) | 3/410 | 12.1 | 3.6% | noncoding (49/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 66784 = | 73 (0.650) | noncoding (220/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 7 (0.060) | 3/432 | 12.5 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3789899 | 550 (4.060) | 11 (0.080) +GGATA |
4/488 | 12.7 | 2.0% | coding (183/1035 nt) | waaH | LPS(HepIII)‑glucuronic acid glycosyltransferase |
| ? | NC_000913 | 3789900 = | 552 (3.980) | coding (182/1035 nt) | waaH | LPS(HepIII)‑glucuronic acid glycosyltransferase | |||||
| * | ? | NC_000913 | = 3774808 | 719 (5.180) | 6 (0.040) | 4/506 | 13.0 | 0.82% | coding (385/1149 nt) | mtlD | mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| ? | NC_000913 | 3774812 = | 733 (5.330) | coding (389/1149 nt) | mtlD | mannitol‑1‑phosphate dehydrogenase, NAD‑dependent | |||||
| * | ? | NC_000913 | 1557358 = | 93 (0.670) | 4 (0.030) | 4/502 | 13.0 | 3.4% | coding (681/927 nt) | ddpF | D,D‑dipeptide ABC transporter ATPase |
| ? | NC_000913 | 1558015 = | 135 (0.990) | coding (24/927 nt) | ddpF | D,D‑dipeptide ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 3823240 | 610 (4.610) | 38 (0.280) +ACAGCCTGT |
3/468 | 13.2 | 5.9% | coding (841/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | NC_000913 | 3823241 = | 624 (4.500) | coding (842/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||