mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 32.3% | 181.7 / 115.2 | 130 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 207 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 113 (0.990) | 18 (0.190) | 15/166 | 8.2 | 16.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 84 (0.880) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2316985 | NA (NA) | 7 (0.100) +40 bp |
6/118 | 9.5 | 9.6% | noncoding (152/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4549883 | 111 (0.980) | intergenic (+173/+70) | fimH/gntP | minor component of type 1 fimbriae/fructuronate transporter | |||||
| * | ? | NC_000913 | = 3648127 | 158 (1.390) | 8 (0.080) | 7/176 | 12.5 | 5.3% | intergenic (‑339/‑401) | dinQ/arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| ? | NC_000913 | = 3648132 | 143 (1.420) | intergenic (‑344/‑396) | dinQ/arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | = 697486 | 101 (0.890) | 7 (0.070) | 6/172 | 13.0 | 7.5% | intergenic (‑353/+27) | metT/asnB | tRNA‑Met/asparagine synthetase B |
| ? | NC_000913 | = 697492 | 86 (0.870) | intergenic (‑359/+21) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | = 3648127 | 159 (1.400) | 7 (0.070) | 6/176 | 13.2 | 4.8% | intergenic (‑339/‑401) | dinQ/arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| ? | NC_000913 | = 3648363 | 136 (1.350) | intergenic (‑575/‑165) | dinQ/arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | = 4168341 | 22 (0.190) | 9 (0.090) | 6/178 | 13.3 | 31.3% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | NA (NA) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 3087880 = | NA (NA) | 7 (0.070) | 6/178 | 13.3 | NA | intergenic (+20/‑404) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| ? | NC_000913 | 3087905 = | NA (NA) | intergenic (+45/‑379) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter | |||||
| * | ? | NC_000913 | 2729453 = | NA (NA) | 9 (0.090) | 6/178 | 13.3 | 38.5% | intergenic (‑9/+163) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2729475 = | 16 (0.140) | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 4040728 = | NA (NA) | 9 (0.090) | 6/180 | 13.4 | 28.4% | intergenic (+92/+178) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | 4040733 = | 25 (0.220) | intergenic (+97/+173) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 3330460 = | NA (NA) | 4 (0.040) +GCTGCCCCTCTCCTCACG |
4/162 | 13.8 | 3.9% | noncoding (1/98 nt) | RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3774394 | 122 (1.070) | intergenic (+200/‑30) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent | |||||