| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3680367 = | NA (NA) | 7 (0.080) | 6/162 | NT | NA | noncoding (1/76 nt) | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3680397 = | NA (NA) | noncoding (31/76 nt) | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3680473‑3680367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCG > NC_000913/3680397‑3680495 GAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTT > 1:1901112/1‑100GAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTT < 1:250525/100‑1 AAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTA < 2:1507118/100‑1 AGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT < 2:989602/100‑1 AGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT < 1:1438654/100‑1 GTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGAAAGAGGGGTAACACTTTATC > 1:2122788/1‑100 GACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCA > 2:1223389/1‑100 GACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCA > 1:584341/1‑100 CGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC < 1:886602/100‑1 ATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGG > 1:2185121/1‑100 ATGAGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATA > 2:659377/1‑100 TGAGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATAT > 1:395774/1‑100 TGAGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATAT > 1:1666482/1‑100 GCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCG > 1:2051061/1‑100 TGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTC > 1:1547146/1‑100 GGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCA > 1:1145304/1‑100 TTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCA < 2:1145299/100‑1 ATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCC > 2:2054312/1‑100 TCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCG > 1:2611425/1‑100 CCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGT > 1:1220772/1‑100 CAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGagcaaagat > 1:2582878/1‑91 nGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGG > 2:1729101/2‑100 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC > 1:940723/1‑100 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC < 2:2611407/100‑1 CTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCG > 2:1365990/1‑100 GAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3680473‑3680367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCG > NC_000913/3680397‑3680495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |