New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4285342	NA (NA)	6 (0.070)	6/164	NT	NA	noncoding (41/77 nt)	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 4285374	NA (NA)					noncoding (73/77 nt)	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences

TTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4285245‑4285342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT  <  NC_000913/4285374‑4285269                                                                                                                                                                                                              TTTTAATTCCCGCTCACTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGTGTTTACGCCGCATCCGGCAATCAATG                                                                                                           >  2:539116/1‑99   TTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTACCCCTTGCCGAATGTAGGCCGGATACGGCGTTTACGCCGCATCCGGCAATCAATGCCT                                                                                                        >  2:2636112/1‑100   TTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCC                                                                                                         <  2:1002906/99‑1     tcTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGA                                                                                                      <  1:2620861/98‑1      nTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAT                                                                                                     >  1:25818/2‑100      ATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAT                                                                                                     >  1:1983707/1‑100      ATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAT                                                                                                     >  1:234235/1‑100        TCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAaga                                                                                                   >  2:2620843/1‑97         CCCGCTCCCTGATGGGAGAAGGTTAACGCTCGGGTAATCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCT                                                                                                        <  2:2218546/94‑1                        GAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGAT‑‑‑‑‑GCGACAGCGTCGCATCAG                                                                              <  2:766842/100‑1                              gtgAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGG                                                                             <  1:2451646/97‑1                                 AACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCAT                                                                          <  1:2200556/100‑1                                  ACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATT                                                                         <  2:2039426/100‑1                                   CGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTG                                                                        <  2:1122378/100‑1                                     CTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGAT                                                                      <  1:1398001/100‑1                                                                                                   GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATTCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAA        <  2:1912614/100‑1                                                                                                   GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAA        <  1:1060175/100‑1                                                                                                   GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAA        <  2:989926/100‑1                                                                                                    CCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAAC       >  2:2255478/1‑100                                                                                                    CCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAAC       >  1:254582/1‑100                                                                                                     CTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACC      <  2:1567092/100‑1                                                                                                      TGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCT     <  1:1152116/100‑1                                                                                                       GATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTT    >  1:1513623/1‑100                                                                                                        ATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGGGCGTTAACCTTC   <  1:1803935/100‑1                                                                                                         TAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGTGTTAACCTTCT  <  1:699482/100‑1                                                                                                         TAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT  <  2:2081024/100‑1                                                                                                                                                                                                              TTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4285245‑4285342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATAAGACGCGACAGCGTCGCATCAGGCATTGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACATTCGGCAAGGGTTACCCGAGCGTTAACCTTCT  <  NC_000913/4285374‑4285269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.