New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4285342NA (NA)6 (0.070) 6/164 NT NA noncoding (41/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 4285374 NA (NA)noncoding (73/77 nt) REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 148 total aligned reads displayed.

TTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTC  >  NC_000913/4285245‑4285440
                                                                                                 |                                                                                                  
ttttAATTCCCGCTCACTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGTGTTTACGCCGCATCCGGCAATCAATg                                                                                                   >  2:539116‑M1/1‑98 (MQ=255)
  ttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTACCCCTTGCCGAATGTAGGCCGGATACGGCGTTTACGCCGCATCCGGCAATCAATgcct                                                                                                >  2:2636112‑M1/1‑96 (MQ=255)
  ttAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcc                                                                                                 <  2:1002906‑M1/99‑4 (MQ=255)
     nttcCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat                                                                                             >  1:25818‑M1/2‑93 (MQ=255)
     aTTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgat                                                                                             >  1:234235‑M1/1‑93 (MQ=255)
      ttCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATg                                                                                            <  1:484429/100‑1 (MQ=255)
       accttcTCCCATAAGGGAGAAGGTTAACGCTCGAGTAACCCTTGCCGAATGTAGGCCGGATAAGGAGTTTCTGCCGCATCCGGCAATCAAGGCCCGATGc                                                                                           >  2:1654210/6‑100 (MQ=25)
        cccGCTCCCTGATGGGAGAAGGTTAACGCTCGGGTAATCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcct                                                                                                <  2:2218546‑M1/94‑5 (MQ=255)
         cttcTCCCATAAGGGAGAAGGGTAACGCTCGGGTAACCCTTTCCGAATGTAGGCCGGATAAGGCTTTTACGCCGCATCCGGCAATCAATGCCTGATGCGa                                                                                         >  2:2441546/4‑100 (MQ=25)
              cccTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTg                                                                                    >  1:2407846/1‑100 (MQ=255)
                cTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTc                                                                                  <  1:2261682/100‑1 (MQ=255)
                  tATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                                                                                >  1:1549316/1‑100 (MQ=255)
                  tATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                                                                                <  1:1624076/100‑1 (MQ=255)
                  tATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                                                                                <  2:586568/100‑1 (MQ=255)
                    tGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgcg                                                                               <  2:707339/99‑1 (MQ=255)
                    tGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                                                                              <  2:2537050/100‑1 (MQ=255)
                    tGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGt                                                                              <  1:2639560/100‑1 (MQ=255)
                     gggAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                                                                             <  2:633991/100‑1 (MQ=255)
                      ggAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCt                                                                            >  1:2172689/1‑100 (MQ=255)
                         gaAGGTTAACGCCCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTAT                                                                         <  1:1803935‑M2/100‑1 (MQ=255)
                           aGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCA                                                                       <  1:1152116‑M2/100‑1 (MQ=255)
                            ggTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAG                                                                      <  2:1567092‑M2/100‑1 (MQ=255)
                             gtgaacgcTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcagg                                                                     <  1:2451646‑M1/97‑32 (MQ=255)
                             gTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGG                                                                     >  2:2255478‑M2/1‑100 (MQ=255)
                              ttAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGC                                                                    <  1:1060175‑M2/100‑1 (MQ=255)
                               tAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGcc                                                                   >  2:2307553/1‑100 (MQ=255)
                               tAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGcc                                                                   <  1:1406457/100‑1 (MQ=255)
                                aaCGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcat                                                                  <  1:2200556‑M1/100‑35 (MQ=255)
                                 aCGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcatt                                                                 <  2:2039426‑M1/100‑36 (MQ=255)
                                 aCGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTa                                                                 >  2:1152592/1‑100 (MQ=255)
                                  cGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATgcctgataagacgcgacagcgtcgcatcaggcattg                                                                <  2:1122378‑M1/100‑37 (MQ=255)
                                  cGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTa                                                                 <  2:1413991/99‑1 (MQ=255)
                                  cGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTAc                                                                >  2:1697107/1‑100 (MQ=255)
                                    cTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACaa                                                              <  1:2524877/100‑1 (MQ=255)
                                    cTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACa                                                               <  1:1923870/99‑1 (MQ=255)
                                      cGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAAc                                                            >  1:581724/1‑100 (MQ=255)
                                       gggTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAAcc                                                           <  2:1772913/100‑1 (MQ=255)
                                        ggTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGCCGCTGTCGCGTCTTATCAGGCCTACAAACCg                                                          >  2:314061/1‑100 (MQ=255)
                                        ggTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCg                                                          >  1:1130502/1‑100 (MQ=255)
                                         gTAGCCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGt                                                         <  2:609318/100‑1 (MQ=255)
                                         gTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGt                                                         <  2:907919/100‑1 (MQ=255)
                                          tAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGtt                                                        <  1:1850665/100‑1 (MQ=255)
                                           agcccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTa                                                       <  2:653942/98‑1 (MQ=255)
                                             cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                     >  1:2572265/1‑100 (MQ=255)
                                             cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                     <  2:1514523/100‑1 (MQ=255)
                                             cccTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTAcc                                                     >  2:1283582/1‑100 (MQ=255)
                                                 tGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACt                                                 >  2:1831197/1‑100 (MQ=255)
                                                  gCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTc                                                >  2:412794/1‑100 (MQ=255)
                                                  gCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTc                                                >  2:380609/1‑100 (MQ=255)
                                                  gCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTACCAGGCCTACAAACCGTTACCGACTc                                                >  1:2656616/1‑100 (MQ=255)
                                                   ccGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCg                                               <  1:428972/100‑1 (MQ=255)
                                                    cGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGc                                              >  1:1786852/1‑100 (MQ=255)
                                                     gAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCa                                             >  1:2038290/1‑100 (MQ=255)
                                                      aaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCAt                                            <  2:1770820/100‑1 (MQ=255)
                                                         gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCgg                                         <  1:1545618/100‑1 (MQ=255)
                                                          tAGGCCGGATAAGGCGTTTACGCCGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCggg                                        >  2:1383612/1‑100 (MQ=255)
                                                          tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCggg                                        >  2:2608266/1‑100 (MQ=255)
                                                          tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCggg                                        <  2:444457/100‑1 (MQ=255)
                                                          tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCggg                                        <  2:2387837/100‑1 (MQ=255)
                                                           aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACCCGTTACCGACTCGCATCggg                                        >  2:1270724/1‑99 (MQ=255)
                                                           aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGc                                       >  2:67756/1‑100 (MQ=255)
                                                           aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCAGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCTTTACCGACTCGCATCGGGc                                       <  2:239195/100‑1 (MQ=255)
                                                            ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCa                                      >  2:1735274/1‑100 (MQ=255)
                                                            ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCa                                      >  1:1755709/1‑100 (MQ=255)
                                                            ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCa                                      <  1:1992567/100‑1 (MQ=255)
                                                            ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCa                                      >  1:49436/1‑100 (MQ=255)
                                                            ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCa                                      >  1:806356/1‑100 (MQ=255)
                                                            gaccGGATAAGGCTTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCa                                      >  1:1869860/3‑100 (MQ=255)
                                                             gCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCaa                                     >  1:1220130/1‑100 (MQ=255)
                                                              ccGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAAt                                    >  2:2144046/1‑100 (MQ=255)
                                                                   tAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGCCTCGCATCGGGCAATTGTgg                               <  2:1676610/100‑1 (MQ=255)
                                                                    aaGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggg                              <  2:984918/100‑1 (MQ=255)
                                                                    aaGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTggg                              <  2:807595/100‑1 (MQ=255)
                                                                        cGTTTACGCCGCATCCGGCAATCACTGCCTGATGCGACGCTGTCGCGTCTTATCCGGCCTAAAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTAc                          <  2:810188/100‑1 (MQ=255)
                                                                        cGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTAc                          <  1:1113713/100‑1 (MQ=255)
                                                                           ttACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGAt                       <  1:927197/100‑1 (MQ=255)
                                                                             aCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATgg                     >  1:2525918/1‑100 (MQ=255)
                                                                              cgccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGc                    <  2:2054150/100‑1 (MQ=255)
                                                                              cgccgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGc                    >  2:351740/1‑100 (MQ=255)
                                                                                 cgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATc                 >  1:294636/1‑100 (MQ=255)
                                                                                   cATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcgc               <  1:2296557/100‑1 (MQ=255)
                                                                                   cATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcg                <  2:2063762/99‑1 (MQ=255)
                                                                                    aTCGGGCATTGATTGCCGGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTCGCTGACGATGGCATcgc               >  2:1872713/1‑99 (MQ=25)
                                                                                    aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcgcg              >  2:1010587/1‑100 (MQ=255)
                                                                                    aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcgcg              <  1:784255/100‑1 (MQ=255)
                                                                                    aTCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATcgcg              <  1:919565/100‑1 (MQ=255)
                                                                                      ccGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGAt            >  1:1652221/1‑100 (MQ=255)
                                                                                      ccGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGAt            >  2:633713/1‑100 (MQ=255)
                                                                                       cGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATa           >  2:2119/1‑100 (MQ=255)
                                                                                       cGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATa           >  2:1567145/1‑100 (MQ=255)
                                                                                       cGGCAATCAATGCCTGATGCGACGCTGTCGAGTCTTATCAGGCCTACAAACCGTTACCGACTAGCAACGGGCACTTGCGGGTTACGATGGCCTCCCGaga           >  2:1248928/1‑98 (MQ=21)
                                                                                        ggCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAg          <  1:673283/100‑1 (MQ=255)
                                                                                        ggCAATCAAGGCCTGATGCGACGCTGTCGCGTCTGTGCAAGCCTTCAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATan          <  2:200763/100‑2 (MQ=37)
                                                                                          caatcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGcc        <  1:1301939/100‑1 (MQ=255)
                                                                                            atcaatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCattgattgccggatgcggcgtaaacgccttatccggcctacattcggcaagggttacccgag      <  1:1398001‑M2/100‑63 (MQ=255)
                                                                                              caatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCt    >  2:1065923/1‑100 (MQ=255)
                                                                                               aatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCtt   >  2:2182129/1‑100 (MQ=255)
                                                                                               aatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCtt   >  2:2182140/1‑100 (MQ=255)
                                                                                               aatGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCtt   >  1:1055200/1‑100 (MQ=255)
                                                                                                atGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTtc  <  2:2462779/100‑1 (MQ=255)
                                                                                                 |                                                                                                  
TTTTAATTCCCGCTCCCTTATGGGAGAAGGTTAACGCTCGGGTAACCCTTGCCGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAAACCGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTC  >  NC_000913/4285245‑4285440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.