| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 758452 = | NA (NA) | 7 (0.080) | 4/164 | NT | NA | noncoding (44/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4554508 | NA (NA) | noncoding (4/34 nt) | REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TTTTTAAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/758557‑758452‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGG < NC_000913/4554508‑4554436 TTTTTAAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATAAGGCGTTCACGCCGCA < 1:1118790/100‑1 TTTAAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGTGCTTATCAGGCCTACTGGTAATGACTTGTAGGCCTGCTAAGGCGTTCAAGCCGCATC > 1:377449/1‑100 TTTAAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATAAGGCGTTCACGCCGCATC > 2:2279838/1‑100 TTTAAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATAAGGCGTTCACGCCGCATC > 2:2567945/1‑100 TTTAAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATAAGGCGGTCACGCCGCAT > 1:546623/1‑99 TAAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCG > 2:1977471/1‑100 AAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGG < 1:269921/100‑1 AAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC > 1:2591826/1‑100 AGATTTCCTGCATTTCTTTGTTACGCCTGAGGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCC < 2:856711/100‑1 TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTCCGGCCCCCGTTAATCTCAAACTATACCATTAGCTCTGTAAGTTGGCAC > 2:803681/1‑99 GGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTA > 1:2305939/1‑100 GGCCGGATAAGGCGGTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGT > 2:2448695/1‑99 CGGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAG > 1:1452291/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGG > 1:2036706/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAG > 1:988274/1‑99 GGATAAGGCGTTCACGCCGCATCCGGCCTACAACGGGCAATTTTACGGCCACCGTTAATCTTAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGG > 1:2230442/1‑100 TTTTTAAAGATTTCCTGCATTTCTTTGTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGGGTAATGACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/758557‑758452‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAACGGGCAATTTTACGGCCCCCGTTAATCTCAAACTATACCATTAGCACTGGAAGTTGGCACGTACAGG < NC_000913/4554508‑4554436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |