New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1735983 =	NA (NA)	8 (0.090)	7/166	NT	NA	noncoding (1/74 nt)	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	1736008 =	NA (NA)					noncoding (26/74 nt)	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences

CAGTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1736084‑1735983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCT  >  NC_000913/1736008‑1736106                                                                                                                                                                                                           CAGTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAG                                                                                                       >  1:410065/1‑100   tccgatctCAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC                                                                                                     <  2:920875/92‑1   GTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC                                                                                                     <  2:1486795/100‑1   GTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC                                                                                                     >  2:797625/1‑100   GTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC                                                                                                     >  1:706397/1‑100   GTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC                                                                                                     >  1:2432037/1‑100                                                            CATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAA                                            >  1:2046316/1‑100                                                                       CGCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGT                                 >  1:2059149/1‑100                                                                        GCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGTATCCGGCAAGATAAATCGCACGTTGTC                                >  2:444907/1‑100                                                                           TAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGC                             >  1:1056106/1‑100                                                                             GGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAA                           >  1:1651103/1‑100                                                                              GCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAAC                          >  1:1199137/1‑100                                                                               CCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATACGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACT                         >  2:2224934/1‑100                                                                               CCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACT                         >  2:713809/1‑100                                                                                                  CAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCC      >  2:1957521/1‑100                                                                                                   AGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCT     <  2:1636490/100‑1                                                                                                     GCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCTTC   <  2:2598914/100‑1                                                                                                      CCTACGCGGATCATCGATGTATGTCGGATAAGGTACTCGCCGCATCCGTCAAGATAAATCGCCCGTTGTCAGCAACTGTAACGCAGAAGGTTATCC      <  2:1728319/96‑1                                                                                                      CCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCT  >  1:675191/1‑100                                                                                                                                                                                                           CAGTTGCTGACAACGTGCGATTTATCTTGCCGGATGCGGCGAGTGCCTTATCCGACCTACATCGATGATCCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1736084‑1735983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCT  >  NC_000913/1736008‑1736106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.