New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1735983 =NA (NA)8 (0.090) 7/166 NT NA noncoding (1/74 nt) REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 1736008 = NA (NA)noncoding (26/74 nt) REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 119 total aligned reads displayed.

TTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTG  >  NC_000913/1735909‑1736107
                                                                                                   |                                                                                                   
ttgctgacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGcc                                                                                                     >  1:1651103‑M1/75‑100 (MQ=255)
ttCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGcc                                                                                                     <  2:1765224/100‑1 (MQ=255)
  gctgacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGCCTa                                                                                                   >  1:1056106‑M1/73‑100 (MQ=255)
   tGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTAc                                                                                                  <  2:858001/100‑1 (MQ=255)
    gggCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTAcg                                                                                                 >  1:1874822/1‑100 (MQ=255)
     gacaacgtgcgatttatcttgccggatacggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGCCTAcgc                                                                                                >  2:444907‑M1/70‑100 (MQ=255)
      gcgcTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTAcgcg                                                                                               <  1:2206433/100‑1 (MQ=255)
      acaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGCCTAcgcg                                                                                               >  1:2059149‑M1/69‑100 (MQ=255)
       cgcTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCgg                                                                                              >  1:1388651/1‑100 (MQ=255)
        gcTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGa                                                                                             >  1:2709159/1‑100 (MQ=255)
         cTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGat                                                                                            <  2:1185031/100‑1 (MQ=255)
         cTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGa                                                                                             >  1:2673568/1‑99 (MQ=255)
             tGAACTGGGAATTCTTAGCGAAAAATCTCGCTGCATAATTACTGATGGCAAATGCAGGATTGCCTGAAGCGCTACGCTTTCAGGCCTACGCGGATCATCg                                                                                       <  2:2451828/100‑1 (MQ=255)
             tGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatcatc                                                                                        <  2:310480/100‑1 (MQ=255)
             tGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatcatc                                                                                        <  1:2358451/100‑1 (MQ=255)
             tGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatcatc                                                                                        <  1:32283/100‑1 (MQ=255)
              gAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCg                                                                                       <  1:1142121/100‑1 (MQ=255)
                aCTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGAt                                                                                     >  2:1559728/1‑100 (MQ=255)
                 tttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATg                                                                                    >  1:2046316‑M1/58‑100 (MQ=255)
                 cTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATg                                                                                    >  2:762209/1‑100 (MQ=255)
                 cTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATg                                                                                    <  1:2217777/100‑1 (MQ=255)
                   gggAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTa                                                                                  >  2:829981/1‑100 (MQ=255)
                   gggAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTa                                                                                  >  1:1685227/1‑100 (MQ=255)
                    ggAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAg                                                                                 <  1:2223180/100‑1 (MQ=255)
                     taaTCCGAAGCGAAAAATCTCGCTGCATAATAACTGAAGGCAAATGCAGCACTGCCTGAAGTTCTACTCTTATCACGCCTACGCGGATCATCg                                                                                       <  2:246174/92‑1 (MQ=255)
                     gAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAgg                                                                                <  1:120340/100‑1 (MQ=255)
                        ttCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTc                                                                              >  2:1432201/1‑99 (MQ=255)
                        ttCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCg                                                                             <  1:876948/100‑1 (MQ=255)
                           gTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGAt                                                                          <  2:693328/100‑1 (MQ=255)
                            tAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATa                                                                         <  1:14079/100‑1 (MQ=255)
                              gCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATaa                                                                        >  2:868429/1‑99 (MQ=255)
                              gCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAg                                                                       <  1:159366/100‑1 (MQ=255)
                               cGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAgg                                                                      >  1:337881/1‑100 (MQ=255)
                               cGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAgg                                                                      <  1:772360/100‑1 (MQ=255)
                               cGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAg                                                                       >  2:1139600/1‑99 (MQ=255)
                                gagaaaTCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCAGCGATGTACGTCGGATCAGGc                                                                     >  2:2740133/4‑100 (MQ=37)
                                gAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATGGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGc                                                                     <  2:1740374/100‑1 (MQ=255)
                                gAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCAGTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGc                                                                     <  2:229810/100‑1 (MQ=255)
                                  aaaaTCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCAc                                                                   <  2:284864/100‑1 (MQ=255)
                                    aaTCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTc                                                                 >  1:2111918/1‑100 (MQ=255)
                                     aTCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTcg                                                                >  2:2456672/1‑100 (MQ=255)
                                       ctcGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTcgcc                                                              >  2:2432021/1‑100 (MQ=255)
                                         cGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTcgccgc                                                            <  1:2527141/100‑1 (MQ=255)
                                           cTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCAt                                                          <  2:1884400/100‑1 (MQ=255)
                                               ataataACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCgg                                                      <  2:216155/100‑1 (MQ=255)
                                               ataataACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCgg                                                      <  2:1889568/100‑1 (MQ=255)
                                                taataaCTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGc                                                     <  2:1104268/100‑1 (MQ=255)
                                                taataaCTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGc                                                     <  2:1104305/100‑1 (MQ=255)
                                                   taaCTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAg                                                  >  1:892729/1‑100 (MQ=255)
                                                     aCTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGAt                                                <  1:1689814/100‑1 (MQ=255)
                                                      cTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATa                                               >  1:930791/1‑100 (MQ=255)
                                                      cTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATa                                               >  1:930877/1‑100 (MQ=255)
                                                        gATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATaaa                                             >  1:2352750/1‑100 (MQ=255)
                                                        catcgatgatccgcgtaggcctgataagcgtagcgcttcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATaaa                                             >  1:2046316‑M2/44‑100 (MQ=255)
                                                         aTGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAAt                                            >  1:463695/1‑100 (MQ=255)
                                                          tGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATc                                           <  1:2488000/100‑1 (MQ=255)
                                                           ggCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGTCCTGCGCGGATCATCGATGTAGGTCGGATACGGCACTCGCCGCATCCGGCAAGCTAAATCg                                          >  2:1698029/1‑100 (MQ=38)
                                                           ggCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCg                                          >  1:508551/1‑100 (MQ=255)
                                                            gCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGc                                         >  2:22290/1‑100 (MQ=255)
                                                            gCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGc                                         <  2:868340/100‑1 (MQ=255)
                                                             cAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCa                                        <  2:1559810/100‑1 (MQ=255)
                                                              aaaTGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCAc                                       >  1:767796/1‑100 (MQ=255)
                                                              aaaTGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCAc                                       >  2:803404/1‑100 (MQ=255)
                                                                aTGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGt                                     >  2:2015023/1‑100 (MQ=255)
                                                                  tccgatctGCCTGAAGCGCTACGCTTATCGGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTg                                   <  1:920879/93‑1 (MQ=255)
                                                                   cgcgtaggcctgataagcgtagcgcttcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGt                                  >  1:2059149‑M2/33‑100 (MQ=255)
                                                                       taggcctgataagcgtagcgcttcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGc                              >  1:1056106‑M2/29‑100 (MQ=255)
                                                                        ttGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGc                              <  2:1080846/99‑1 (MQ=255)
                                                                         tGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCAGTCGCCGCATCCGGAAAGATAAATCGCACGTTGTCAGCaa                            >  1:2411682/1‑100 (MQ=255)
                                                                         tGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCa                             <  2:872500/99‑1 (MQ=255)
                                                                         ggcctgataagcgtagcgcttcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCaa                            >  1:1651103‑M2/27‑100 (MQ=255)
                                                                          gcctgataagcgtagcgcttcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAAc                           >  1:1199137‑M2/26‑100 (MQ=255)
                                                                          GCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATcgcacgttgagatcgga                           <  2:920875‑M1/100‑9 (MQ=255)
                                                                          GCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAAc                           >  1:2432037‑M1/1‑100 (MQ=255)
                                                                          GCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAAc                           >  1:706397‑M1/1‑100 (MQ=255)
                                                                          GCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAAc                           <  2:1486795‑M1/100‑1 (MQ=255)
                                                                          GCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAAc                           >  2:797625‑M1/1‑100 (MQ=255)
                                                                           cctgataagcgtagcgcttcaggcCTACGCGGATCATCGATGTAGGTCGGATACGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACt                          >  2:2224934‑M2/25‑100 (MQ=255)
                                                                           cctgataagcgtagcgcttcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACt                          >  2:713809‑M2/25‑100 (MQ=255)
                                                                            CTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTg                         >  1:410065‑M1/1‑100 (MQ=255)
                                                                                 gcgcTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACg                    >  2:1814031/1‑100 (MQ=255)
                                                                                  cgcTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTACCGc                   >  2:534626/1‑100 (MQ=255)
                                                                                   gcTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCa                  >  2:755344/1‑100 (MQ=255)
                                                                                   gcTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCa                  <  1:1329153/100‑1 (MQ=255)
                                                                                    cTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAg                 <  2:1968261/100‑1 (MQ=255)
                                                                                       cGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAg              >  2:2543451/1‑100 (MQ=255)
                                                                                        gCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAg              >  2:2484098/1‑99 (MQ=255)
                                                                                         cTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGt            <  1:1278116/100‑1 (MQ=255)
                                                                                         cTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGt            >  2:646765/1‑100 (MQ=255)
                                                                                           tATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTa          >  1:1915929/1‑100 (MQ=255)
                                                                                            aTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt         <  2:2156332/100‑1 (MQ=255)
                                                                                            aTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTAt         >  2:772068/1‑100 (MQ=255)
                                                                                              caggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATcc       >  2:1957521‑M2/6‑100 (MQ=255)
                                                                                               aggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCt      <  2:1636490‑M2/96‑1 (MQ=255)
                                                                                                 gcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGATAACCTTc    <  2:2598914‑M2/98‑1 (MQ=255)
                                                                                                  cCTACGCGGATCATCGATGTATGTCGGATAAGGTACTCGCCGCATCCGTCAAGATAAATCGCCCGTTGTCAGCAACTGTAACGCAGAAGGTTATcc       <  2:1728319‑M2/95‑1 (MQ=255)
                                                                                                  cCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCt   >  1:675191‑M2/2‑100 (MQ=255)
                                                                                                   cTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTg  <  1:1382894/100‑1 (MQ=255)
                                                                                                   cTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTg  >  2:136231/1‑100 (MQ=255)
                                                                                                   cTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGAGAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTg  >  1:2503163/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCTG  >  NC_000913/1735909‑1736107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.