New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1929976	NA (NA)	5 (0.050)	3/166	NT	NA	noncoding (54/84 nt)	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 1930006	NA (NA)					noncoding (84/84 nt)	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences

GTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGggcgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1929878‑1929976 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCAATCAGCATCAAACAATGC  <  NC_000913/1930006‑1929904                                                                                                                                                                                                            GTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGG                                                                                                        >  1:690140/1‑100  TGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGG                                                                                                       >  1:1396389/1‑100   GAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGGCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGC                                                                                                      >  2:2519944/1‑100   GAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGC                                                                                                      >  2:2242776/1‑100   GAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGC                                                                                                      <  1:2614533/100‑1   GAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGC                                                                                                      <  1:470444/100‑1   GAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGC                                                                                                      <  2:1286073/100‑1    AAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGCCGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCG                                                                                                     <  1:1906906/100‑1    AAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCG                                                                                                     <  2:1748475/100‑1     tAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGG                                                                                                    <  2:157122/99‑1     AAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCCATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGG                                                                                                    <  1:1730452/100‑1      AGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGA                                                                                                   >  1:157122/1‑100      AGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGA                                                                                                   <  1:671911/100‑1                                GTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCC                                                                         <  1:1716549/100‑1                                GTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCC                                                                         <  1:719703/100‑1                                GTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTCGTGCGTTCTGGGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCt                                                                         <  2:265301/100‑2                                 TTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCA                                                                        <  1:1774962/100‑1                                  TTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAG                                                                       <  1:1570101/100‑1                                                                                                      CGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCAATCAGCATCAAACAATG   <  1:1667451/100‑1                                                                                                       GGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCAATCAGCATCAAACAATGC  >  2:1335805/1‑100                                                                                                                                                                                                            GTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGggcgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1929878‑1929976 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGGATGCGGCGCGAGTGCCTTGTCCGCCCCAGAACGCACCACAATCGTAGGCCTGAGAAGACGCAACAGCGTCGCATCGGGCAATCAGCATCAAACAATGC  <  NC_000913/1930006‑1929904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.