New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1929976NA (NA)5 (0.050) 3/166 NT NA noncoding (54/84 nt) REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 1930006 NA (NA)noncoding (84/84 nt) REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 108 total aligned reads displayed.

TGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACTTTT  >  NC_000913/1929908‑1930105
                                                                                                  |                                                                                                   
gtggactgcaaagcgggaatggcggaatatcagcggcgttaatggcttctgataattcgattgactgttGGCGGACAAGGCACTCGCGCCGCATCCGCCa                                                                                                    >  1:1632247‑M1/70‑100 (MQ=255)
 gTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCaa                                                                                                   >  1:693705/1‑100 (MQ=255)
  tttGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAAc                                                                                                  <  1:1760615/100‑1 (MQ=255)
   gactgcaaagcgggaatggcggaatatcagcggcgttaatggcttctgataattcgattgactgttGGCGGACTAGGCACTCGCGCCGCATCCGCCAACa                                                                                                 >  1:1675811‑M1/67‑100 (MQ=255)
   gactgcaaagcgggaatggcggaatatcagcggcgttaatggcttctgataattcgattgactgttGGCGGACAAGGCACTCGCGCCGCATCCGCCAACa                                                                                                 >  2:858052‑M1/67‑100 (MQ=255)
    tGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAg                                                                                                <  2:198589/100‑1 (MQ=255)
    tGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAg                                                                                                <  2:92301/100‑1 (MQ=255)
    tGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAg                                                                                                >  2:1708725/1‑100 (MQ=255)
    actgcaaagcgggaatggcggaatatcagcggcgttaatggcttctgataattcgattgactgttGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAg                                                                                                >  1:1131554‑M1/66‑100 (MQ=255)
    actgcaaagcgggaatggcggaatatcagcggcgttaatggcttctgataattcgattgactgttGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAg                                                                                                >  1:1737558‑M1/66‑100 (MQ=255)
     gATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGt                                                                                               >  1:996531/1‑100 (MQ=255)
     ctgcaaagcgggaatggcggaatatcagcggcgttaatggcttctgataattcgattgactgttGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGt                                                                                               >  1:2333903‑M1/65‑100 (MQ=255)
      tgcaaagcgggaatggcggaatatcagcggcgttaatggcttctgataattcgattgactgttGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTc                                                                                              >  1:480089‑M1/64‑100 (MQ=255)
       tGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCa                                                                                             >  1:423207/1‑100 (MQ=255)
       tGCTGATTGCCCGATGCGACGCTGTGGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAg                                                                                                <  2:828561/97‑1 (MQ=255)
         cTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAAt                                                                                           <  2:280754/100‑1 (MQ=255)
          tGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATc                                                                                          >  1:2597260/1‑100 (MQ=255)
             ttGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGaa                                                                                       >  2:1585902/1‑100 (MQ=255)
              tGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAt                                                                                      <  1:609059/100‑1 (MQ=255)
               gCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAtt                                                                                     >  2:1009594/1‑100 (MQ=255)
               gCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAAtt                                                                                     >  1:1195556/1‑100 (MQ=255)
                cccGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTa                                                                                    >  1:641449/1‑100 (MQ=255)
                cccGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGCCAATCGAATTa                                                                                    >  2:2323769/1‑100 (MQ=255)
                  cGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATc                                                                                  <  2:670420/100‑1 (MQ=255)
                  cGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCACGCCGCATCCGCCAACAGTCAATCGAATTATc                                                                                  <  1:2608957/100‑1 (MQ=255)
                   gATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCa                                                                                 >  2:2234081/1‑100 (MQ=255)
                   gATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCa                                                                                 >  2:2365787/1‑100 (MQ=255)
                     tGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGa                                                                               <  1:2242791/100‑1 (MQ=255)
                       cGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAg                                                                             >  1:1962750/1‑100 (MQ=255)
                       cGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAg                                                                             >  2:2441755/1‑100 (MQ=255)
                       cGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCCGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCaca                                                                               >  2:2671123/1‑96 (MQ=255)
                        gACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGc                                                                            >  1:1037963/1‑100 (MQ=255)
                         aCGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGcc                                                                           >  2:746494/1‑100 (MQ=255)
                         aCGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGcc                                                                           <  1:2013264/100‑1 (MQ=255)
                          cGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGcc                                                                           >  2:792570/1‑99 (MQ=255)
                            caacagCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCAtt                                                                        >  2:253007/6‑100 (MQ=255)
                            cTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCAtt                                                                        <  1:621310/100‑1 (MQ=255)
                               ttGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAAc                                                                     <  1:2243441/100‑1 (MQ=255)
                                 gCGTCTTCTCGGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTaa                                                                      >  2:5593/1‑97 (MQ=255)
                                 gCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAAcgc                                                                   >  1:1435834/1‑100 (MQ=255)
                                 gCGTCTTCTCAGGACTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAAcgc                                                                   >  1:1868472/1‑100 (MQ=255)
                                  cGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAAcgcc                                                                  >  2:1735783/1‑100 (MQ=255)
                                     cttctCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCt                                                               >  2:934838/1‑100 (MQ=255)
                                     cttctCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCt                                                               >  1:2347395/1‑100 (MQ=255)
                                        ctcAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGat                                                            >  1:2020012/1‑100 (MQ=255)
                                             gCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTACCGCCGCTGATATTcc                                                       >  1:2704534/1‑100 (MQ=255)
                                                tACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGcc                                                    <  1:1294968/100‑1 (MQ=255)
                                                  cGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCAt                                                  >  2:170990/1‑100 (MQ=255)
                                                       gtggtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCg                                             >  1:350408/1‑100 (MQ=255)
                                                         ggtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGc                                            >  2:2503317/1‑99 (MQ=255)
                                                         ggtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCt                                           >  2:64635/1‑100 (MQ=255)
                                                         ggtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCt                                           >  2:2317860/1‑100 (MQ=255)
                                                         ggtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCt                                           <  1:979455/100‑1 (MQ=255)
                                                          gtgCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCtt                                          >  1:2746389/1‑100 (MQ=255)
                                                            gCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTg                                        <  1:1527852/100‑1 (MQ=255)
                                                            gCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTg                                        <  1:2368957/100‑1 (MQ=255)
                                                             cGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGc                                       <  1:1004069/100‑1 (MQ=255)
                                                             cGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGc                                       <  1:1801513/100‑1 (MQ=255)
                                                             cGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGc                                       >  2:18490/1‑100 (MQ=255)
                                                               ttCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAg                                     <  1:230406/100‑1 (MQ=255)
                                                                tCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAg                                     <  2:2513150/99‑1 (MQ=255)
                                                                tCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGt                                    <  1:937550/100‑1 (MQ=255)
                                                                tCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGt                                    >  1:96603/1‑100 (MQ=255)
                                                                 cTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaa                                   <  1:1570101‑M2/100‑67 (MQ=255)
                                                                 cTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGCTATTCCGCCATTCCCGCTTTGCAGTc                                   >  1:2508381/1‑100 (MQ=255)
                                                                 cTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTc                                   >  1:658925/1‑100 (MQ=255)
                                                                  tGGGGCGGACAAGGCACTCGCGCCGCATCCGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaa                                  <  1:1774962‑M2/100‑68 (MQ=255)
                                                                  tGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATGAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTcc                                  <  2:1559412/100‑1 (MQ=255)
                                                                  tGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTcc                                  >  2:321668/1‑100 (MQ=255)
                                                                   ggggCGGACAAGGCACTCGCGCCGCATCCGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaac                                 <  1:1716549‑M2/100‑69 (MQ=255)
                                                                   ggggCGGACAAGGCACTCGCGCCGCATCCGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaac                                 <  1:719703‑M2/100‑69 (MQ=255)
                                                                   ggggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCa                                 <  1:614054/100‑1 (MQ=255)
                                                                   ggggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCa                                 >  2:1485340/1‑100 (MQ=255)
                                                                   ggggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCa                                 >  1:166906/1‑100 (MQ=255)
                                                                   agggcGGACAAGGCACTCGCGCCGCATCCGCCccagaacgcacgacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaac                                 <  2:265301‑M2/99‑69 (MQ=255)
                                                                    gggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCAc                                <  2:2003096/100‑1 (MQ=255)
                                                                    gggCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCAc                                >  2:2712660/1‑100 (MQ=255)
                                                                     GGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACg                               <  1:1278378‑M1/100‑1 (MQ=255)
                                                                     GGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACg                               <  1:687777‑M1/100‑1 (MQ=255)
                                                                      GCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGc                              >  1:1586163‑M1/1‑100 (MQ=255)
                                                                        GGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTg                            <  1:1763036‑M1/100‑1 (MQ=255)
                                                                         GACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGa                           <  2:259053‑M1/100‑1 (MQ=255)
                                                                             aGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTg                       <  1:2610401/100‑1 (MQ=255)
                                                                              ggCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTgg                      >  2:2071836/1‑100 (MQ=255)
                                                                              ggCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTgg                      <  2:641447/100‑1 (MQ=255)
                                                                               gCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGt                     <  1:2529232/100‑1 (MQ=255)
                                                                                cACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTa                    >  2:2524833/1‑100 (MQ=255)
                                                                                  cTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAAt                  >  2:1998196/1‑100 (MQ=255)
                                                                                    cgcgCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGa                <  1:321668/100‑1 (MQ=255)
                                                                                        ccgcATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAatat            >  1:988485/1‑100 (MQ=255)
                                                                                             tCCGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactact       >  1:157122‑M2/1‑6 (MQ=255)
                                                                                              ccGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatggggcaatcagcatcaaacaatgccactcaaaacgacaaactactt      <  1:1730452‑M2/100‑96 (MQ=255)
                                                                                               cGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactacttt     <  2:1748475‑M2/100‑97 (MQ=255)
                                                                                               cGCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcggcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactacttt     <  1:1906906‑M2/100‑97 (MQ=255)
                                                                                                gCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactactttc    <  1:470444‑M2/100‑98 (MQ=255)
                                                                                                gCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactactttc    >  2:2242776‑M2/1‑3 (MQ=255)
                                                                                                gCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactactttc    <  2:1286073‑M2/100‑98 (MQ=255)
                                                                                                gCCccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcggccaatcagcatcaaacaatgccactcaaaacgacaaactactttc    >  2:2519944‑M2/1‑3 (MQ=255)
                                                                                                 ccccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactactttca   >  1:1396389‑M2/1‑2 (MQ=255)
                                                                                                  cccagaacgcaccacaatcgtaggcctgagaagacgcaacagcgtcgcatcgggcaatcagcatcaaacaatgccactcaaaacgacaaactactttcac  >  1:690140‑M2/1‑1 (MQ=255)
                                                                                                  |                                                                                                   
TGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCGAATTATCAGAAGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACTTTT  >  NC_000913/1929908‑1930105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.