| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2041152 = | NA (NA) | 5 (0.060) | 6/162 | NT | NA | noncoding (1/34 nt) | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2041182 = | NA (NA) | noncoding (31/34 nt) | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2041257‑2041152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAG > NC_000913/2041182‑2041278 TATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACA < 1:1240288/100‑1TATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACA > 1:1071131/1‑100 ATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACAT > 2:1841168/1‑100 TTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATC > 1:1958289/1‑100 nAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCG > 1:378418/2‑100 GAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCG > 2:1949381/1‑100 GAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCG > 1:2010971/1‑100 GAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCG > 1:2043272/1‑100 GAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCG > 1:2290517/1‑100 AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGC > 1:969077/1‑100 AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGC < 1:565816/100‑1 AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGC > 1:1761151/1‑100 AATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGC > 1:169925/1‑100 ATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATGTGGCGCGAGCGCCCTATCCGGCA < 2:731101/100‑1 ATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCA > 2:1828246/1‑100 TGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATT > 1:1757653/1‑100 TATGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAACATAATTTATTTT > 1:26006/1‑100 GCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT > 1:761813/1‑100 GGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCA > 1:1483739/1‑100 GATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAA > 1:845473/1‑100 ATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAAC < 2:427109/100‑1 ATCCGGCATACACAGATCGCATCAGGTTATGTTTCGATTGTAATCAAACCCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAAATAAGTAta > 2:859369/1‑96 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG > 2:89293/1‑100 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG > 2:2568356/1‑100 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG > 2:2568308/1‑100 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG > 2:1966258/1‑100 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG > 2:1332676/1‑100 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTG > 1:2135228/1‑100 CCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTAATCAACCTCAAATAACCAAAATAATTTATTTTATTTAAATAAGATAGATAAGTAGAAtt > 2:1322685/1‑97 CGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGA < 2:2672768/100‑1 CGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATGTATTTTATTTCAATAAGATAGATAAGTAGAAATGA > 2:344085/1‑100 GGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAG < 2:1399134/100‑1 TATTGAAATAAAATAAATTATTTTGGTGATTTGAGGTTGATGACAAACGAAACATAACCTGATGCGATCTGTGTATGCCGGATAGGGCGCTCGCGCCACATCCGGCa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2041257‑2041152‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAG > NC_000913/2041182‑2041278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |