New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2041152 =NA (NA)5 (0.060) 6/162 NT NA noncoding (1/34 nt) REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2041182 = NA (NA)noncoding (31/34 nt) REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 136 total aligned reads displayed.

ATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT  >  NC_000913/2041054‑2041251
                                                                                                  |                                                                                                   
ataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGc                                                                                                    >  2:2098359/1‑100 (MQ=255)
ataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGc                                                                                                    >  2:1358672/1‑100 (MQ=255)
 taAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGcc                                                                                                   <  1:1970672/100‑1 (MQ=255)
 ctcagttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGcc                                                                                                   <  2:1399134‑M1/3‑1 (MQ=255)
  tcatttctacttatctatcttattgaaataaaatacattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCg                                                                                                  >  2:344085‑M1/97‑100 (MQ=255)
  acctgcttgcgtaaccggttaaaaagggaacgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCg                                                                                                  >  1:693696‑M2/36‑100 (MQ=255)
  aagaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCg                                                                                                  <  1:34046/100‑1 (MQ=255)
   cagttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCgg                                                                                                 >  2:2568356‑M1/96‑100 (MQ=255)
   cagttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCgg                                                                                                 >  2:1966258‑M1/96‑100 (MQ=255)
   cagttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCgg                                                                                                 >  1:2135228‑M1/96‑100 (MQ=255)
    aattctacttatctatcttatttaaataaaataaattattttggttatttgaggttgattacaaacgaaacataacctgatgcgatctgtgtatGCCgg                                                                                                 >  2:1322685‑M1/95‑99 (MQ=255)
     tgcttgcgtaaccggttaaaaagggaacgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAt                                                                                               >  2:1413238‑M2/33‑100 (MQ=255)
     tgcttgcgtaaccggttaaaaagggaacgcaaGCAGGGTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAt                                                                                               >  2:1461457‑M2/33‑100 (MQ=255)
     gttctacttatctatcttattgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGAt                                                                                               <  2:427109‑M1/7‑1 (MQ=255)
      gcttgcgtaaccggttaaaaagggaacgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtg                                                                                              >  1:482827‑M2/32‑100 (MQ=255)
      agTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtg                                                                                              <  2:31780/100‑1 (MQ=255)
       tatacttatttatcttattgaaataaaataaattattttggtgatttgggtttgattacaatcgaaacataacctgatgcgatctgtgtatGCCGGAt                                                                                               >  2:859369‑M1/92‑98 (MQ=255)
       gTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtgt                                                                                             >  1:1371408/1‑100 (MQ=255)
        TTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtgtg                                                                                            <  2:1793408‑M1/100‑1 (MQ=255)
         TGCGTTCCCTTTTTAACCGGTTACGCAAGCAGATTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTgg                                                                                           >  1:1761670‑M1/1‑100 (MQ=255)
           CGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGCTGTGgcg                                                                                         <  1:2352397‑M1/100‑1 (MQ=255)
           CGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGgcg                                                                                         >  1:1400316‑M1/1‑100 (MQ=255)
           CGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGgcg                                                                                         >  1:1336651‑M1/1‑100 (MQ=255)
            GTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCGCAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGgcgc                                                                                        <  2:1818045‑M1/100‑1 (MQ=255)
            GTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAATACGCGTTATCCCTGCCGGATGTGgcgc                                                                                        <  1:814049‑M1/100‑1 (MQ=255)
               cccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAg                                                                                     <  1:2500818/100‑1 (MQ=255)
                ccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAgc                                                                                    >  2:2717584/1‑100 (MQ=255)
                   ttttAACGGGTTACGAAAGCAGGTTAACAACAAATTATCTGTATAACTTCATACTGCAGACAAAGTACGCGTTATCACTGCCGGATGTAGCGCGAgcgtc                                                                                 >  2:1935999/1‑98 (MQ=255)
                    tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGccc                                                                                <  1:1312134/100‑1 (MQ=255)
                    tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCAGGATGTGGCGCGAGCGccc                                                                                <  2:545517/100‑1 (MQ=255)
                    tttAACCGGTTACGCAAGCAGGTTCACAAAAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGccc                                                                                <  1:1183594/100‑1 (MQ=255)
                       aaCCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTTTAACTTCATATTGCCCACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTAt                                                                             >  2:786243/1‑100 (MQ=255)
                        ttgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATc                                                                            >  1:845473‑M1/75‑100 (MQ=255)
                        aCCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATc                                                                            >  1:2446033/1‑100 (MQ=255)
                         tgaaataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATcc                                                                           >  1:1483739‑M1/74‑100 (MQ=255)
                           ggTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCgg                                                                         <  2:977160/100‑1 (MQ=37)
                           ggTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGACGGATGTGGCGCGAGCGCCCTATCCgg                                                                         <  2:1126887/100‑1 (MQ=255)
                            gTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGc                                                                        <  1:503838/100‑1 (MQ=255)
                            aataaaataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGc                                                                        >  1:761813‑M1/71‑100 (MQ=255)
                             tccgatctgCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCa                                                                       <  1:649459/92‑1 (MQ=255)
                              tACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGCag                                                                      <  2:485507/100‑2 (MQ=37)
                              tACGCAAGCAGGTTCACAACAAATTATATGTATAACTTCATATTGCCGACAAAGTACGCGTTATCACTGCCGGATGTAGAGCGAGCGCCCTATCCGGCAt                                                                      >  2:2684273/1‑100 (MQ=255)
                               acgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATa                                                                     >  1:939617‑M2/7‑100 (MQ=255)
                               acgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATa                                                                     <  2:2720801‑M2/94‑1 (MQ=255)
                               aaaataaattatgttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGCATa                                                                     >  1:26006‑M1/68‑100 (MQ=255)
                               aCGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATAGGGCGCTCGCGCCACATCCGGCagg                                                                     <  1:1393366/100‑3 (MQ=25)
                                cgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                    >  2:2233491‑M2/6‑100 (MQ=255)
                                cgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                    >  2:88771‑M2/6‑100 (MQ=255)
                                cgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                    >  1:893102‑M2/6‑100 (MQ=255)
                                cgcaaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATac                                                                    >  2:1360781‑M2/6‑100 (MQ=255)
                                 aataaattattttggtgatttgaggttgatgacaaacgaaacataacctgatgcgatctgtgtatGCCGGATGTGGCGCGAGCGCCCTATCCGGCATaca                                                                   >  1:1757653‑M1/66‑100 (MQ=255)
                                  caaGCAGGTTCACAACTAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATacac                                                                  <  2:1606953‑M2/97‑1 (MQ=255)
                                   aaGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATAcaca                                                                 <  2:858063‑M2/98‑1 (MQ=255)
                                     gCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCaagatcgga                                                               >  2:649457/1‑92 (MQ=255)
                                       aGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATc                                                             <  2:2486991/100‑1 (MQ=255)
                                            cacaACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATc                                                        >  2:1550946/1‑100 (MQ=255)
                                             acaacaAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCa                                                       <  1:114593/100‑1 (MQ=255)
                                              caacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCACTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAg                                                      >  2:2267900/1‑100 (MQ=255)
                                              caacaaATTATCTGTATAACTTCATATTGCCGACAAAATACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAg                                                      >  1:1635221/1‑100 (MQ=255)
                                                acaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGt                                                    <  2:646843/100‑1 (MQ=255)
                                                acaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGt                                                    >  2:2666078/1‑100 (MQ=255)
                                                 caaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGtt                                                   <  2:1295314/100‑1 (MQ=255)
                                                     ttATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGGGCGCCCTATCAGGCATACACAGATCGCATCAGGTTATg                                                >  1:1018245/1‑99 (MQ=255)
                                                     ttATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAgg                                                     >  2:2330846/1‑94 (MQ=255)
                                                          tGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGAGCGCATCAGGTTATGTTTCGt                                          >  2:1908083/1‑100 (MQ=255)
                                                          tGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCAGGCATACACAGATCGCATCAGGTTATGTTTCGt                                          >  2:2046770/1‑100 (MQ=255)
                                                           gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGtt                                         >  1:2603655/1‑100 (MQ=255)
                                                           gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGtt                                         >  1:2664151/1‑100 (MQ=255)
                                                            tataACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGttt                                        >  1:2289361/1‑100 (MQ=255)
                                                              taACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGt                                      <  1:1671527/100‑1 (MQ=255)
                                                               aaCTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtc                                     <  2:2522034/100‑1 (MQ=255)
                                                                aCTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtca                                    >  2:632452/1‑100 (MQ=255)
                                                                aCTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtca                                    <  1:1651501/100‑1 (MQ=255)
                                                                  ttCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtcatc                                  <  1:1620143/100‑1 (MQ=255)
                                                                   tCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtcatca                                 <  2:1355241/100‑1 (MQ=255)
                                                                    cATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGCTTCGTTTGTCATCaa                                >  1:2708438/1‑100 (MQ=255)
                                                                      tatTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAcc                              >  2:969073/1‑100 (MQ=255)
                                                                      tatTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAcc                              >  2:169925/1‑100 (MQ=255)
                                                                       atTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCt                             >  1:1825969/1‑100 (MQ=255)
                                                                        ttGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTc                            >  2:405505/1‑100 (MQ=255)
                                                                           ccGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCaaa                         <  1:1502371/100‑1 (MQ=255)
                                                                           ccGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTAATCAACCTCaaa                         >  2:303345/1‑100 (MQ=255)
                                                                            cGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAAt                        >  1:1546656/1‑100 (MQ=255)
                                                                             gACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATc                       <  1:329307/100‑1 (MQ=255)
                                                                             gACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATc                       >  2:1030582/1‑100 (MQ=255)
                                                                              aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCTTCCACCTCAAATc                       >  1:1562458/1‑99 (MQ=255)
                                                                              aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATcn                      <  2:103210/100‑2 (MQ=255)
                                                                                aaaGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCAcc                    <  2:727211/100‑1 (MQ=255)
                                                                                 aaGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCa                   <  1:446510/100‑1 (MQ=255)
                                                                                    tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCaaaa                >  1:1279509/1‑100 (MQ=255)
                                                                                       gcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAaataa             >  2:1432833/1‑100 (MQ=255)
                                                                                        cgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAaataat            >  1:1293115/1‑100 (MQ=255)
                                                                                            aTCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAatttat        >  2:2160492/1‑100 (MQ=255)
                                                                                             tCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAatttatt       >  2:1682315/1‑100 (MQ=255)
                                                                                                cTGCCGGATGTGGCGTGAGCGCCCTTTCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAAtttatttta    <  2:438031/100‑1 (MQ=255)
                                                                                                cTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAAtttatttt     >  2:2609150/1‑99 (MQ=255)
                                                                                                 tGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAAtttattttat   >  2:1828246‑M1/2‑100 (MQ=255)
                                                                                                 tGCCGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAAtttattttat   <  2:731101‑M1/99‑1 (MQ=255)
                                                                                                  GCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATttattttatt  >  1:969077‑M1/1‑100 (MQ=255)
                                                                                                  GCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATttattttatt  >  1:169925‑M1/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
ATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATT  >  NC_000913/2041054‑2041251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.