| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2252796 = | NA (NA) | 12 (0.130) | 7/164 | NT | NA | noncoding (1/91 nt) | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 2252829 = | NA (NA) | noncoding (34/91 nt) | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
AGCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2252901‑2252796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGT > NC_000913/2252829‑2252927 AGCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCA > 2:390620/1‑100AGCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCA < 1:2400319/100‑1 nCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTCGTAGGCCGGATAAGACGCGTTAAGCGTCGCAT > 2:610993/2‑100 GCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCAT > 1:1532374/1‑100 GCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCAT > 1:2105790/1‑100 GCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCAT > 1:2106750/1‑100 GCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCAT > 2:2489786/1‑100 GCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCAT > 2:1941274/1‑100 GCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCAT > 2:1789739/1‑100 CTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATC > 1:1305859/1‑100 CTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATC > 2:2364631/1‑100 TGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATCCG > 1:685833/1‑100 GAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATCCGG < 2:1644534/100‑1 AGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATCCGGC < 2:981338/100‑1 AGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATCCGGC > 1:1172384/1‑100 AGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATCCGGC < 2:1950501/100‑1 TGTCATTGCCTGATGCGCAAGTTTATTAGTCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAATACTCGTTAAGCGTCGCATCCGGt < 2:534303/98‑2 CCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCA > 1:2552203/1‑100 GTAGACCGGATAAGACGCGTTAAGCGTCGCATCCGGCCAACAAATCAGGCAATTTCCGCAAGTAAACGTAGGCCTGATAAGCTTGCGCATCAGGCAATG > 2:152014/1‑99 TAGGCCGGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGAC > 2:2560989/1‑100 GGCCGGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACAC > 2:1741720/1‑100 GGCCGGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACA > 1:2249493/1‑99 gaCGGATAAGACGCGTTAAGCGACGCATCCGGCCTACAAAACAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACT > 2:1466505/3‑100 GCCGGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACT > 1:2577879/1‑100 GCCGGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACT > 1:150877/1‑100 GGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAGGAAAATGAAGGCCAGATAAGCCTGCGCATCAGGCAATGACACCCAA > 2:854558/1‑100 GGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAA > 2:1270375/1‑100 GGATAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAAAGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAA > 2:1673468/1‑100 TAAGACGCGTTAAGCGTCGCATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCT > 2:2661527/1‑100 ATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCATTGCCACTCAAGCTAAACCAATAAAGAACCCGGC < 2:1804956/100‑1 ATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGC > 2:2357/1‑100 ATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGC < 2:1966082/100‑1 ATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCC > 2:2636789/1‑97 CGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGACTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAAT < 1:141857/100‑1 GGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATG > 1:1730598/1‑100 CCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGT > 2:280883/1‑100 AGCTTGAGTGTCATTGCCTGATGCGCAAGCTTATCAGGCCTACATTTACTTGCTGAAATTGCCTGATTTGTAGGCCGGATAAGACGCGTTAAGCGTCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2252901‑2252796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGT > NC_000913/2252829‑2252927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |