| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4608119 = | 124 (0.920) | 10 (0.080) | 6/166 | NT | 7.4% | coding (317/414 nt) | holD | DNA polymerase III, psi subunit |
| ? | NC_000913 | 4608161 = | 134 (1.060) | coding (359/414 nt) | holD | DNA polymerase III, psi subunit | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GGTAAATCAGTCGTTTCGAGGGAAGAAATCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4608222‑4608119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCT > NC_000913/4608161‑4608257 GGTAAATCAGTCGTTTCGAGGGAAGAAATCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGC > 1:984632/1‑100GGTAAATCAGTCGTTTCGAGGGAAGAAATCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGC > 2:3317827/1‑100GGTAAATCAGTCGTTTCGAGGGAAGAAATCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGC > 1:3008932/1‑100 GTAAATCAGTCGTTTCGAGGGAAGAAACCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTCTGCCCGTAAATCGGTGAGC < 2:1705550/99‑1 TAAATCAGTCGTTTCGAGGGAAGAAATCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGC > 1:1350724/1‑100 AAATCAGTCGTTTCGAGGGAAGAAATCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCC < 1:2477238/100‑1 AATCAGTCGTTTCGAGGGAAGAAATCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCG < 1:503547/100‑1 AACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACT > 1:1913332/1‑100 ACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTG > 2:2435968/1‑100 CGCGGCGCGTGCCATTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGA > 1:2656949/1‑100 GCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGAT > 2:577091/1‑100 CGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGCACACGATTTCTTCCCTCGAAACGACTGATT > 2:2162631/1‑100 CGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATT > 2:3571369/1‑100 CGGCGCGTGCCGTTGGGTTTGACCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATT > 1:506039/1‑100 GGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACCTATGAACACGATTTCTTCCCTCGAAACGACTGATT > 2:3501749/1‑99 GGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCGTCGAAACGACTGATTT > 1:3393653/1‑100 GGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAAAGACTGATTT > 1:1890859/1‑100 GCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGACACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACG > 2:855862/1‑100 GCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACG < 1:969897/100‑1 CGCCGCTTTATGGCAACAAATTTGCACGTATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCTTCTTACCCCATTGAACAACGCGCCCACG < 1:2324065/99‑1 CGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGC > 2:3086590/1‑100 CGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGC > 2:771212/1‑100 GCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCC < 2:1464236/100‑1 GCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCC > 2:1323115/1‑100 GCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCC < 1:905312/100‑1 GCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCC < 1:3501728/100‑1 GCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCC < 1:2979132/100‑1 GCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCC < 1:2933317/100‑1 CCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCT > 2:684164/1‑100 CGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCC < 1:2180404/98‑1 GGTAAATCAGTCGTTTCGAGGGAAGAAATCGTGTTCATATGTGCAAATTTGTTGCCATAACGCGGCGCGTGCCGTTGGGTTTGCCCGTAAATCGGTGAGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4608222‑4608119‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCT > NC_000913/4608161‑4608257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |