New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4608119 =124 (0.920)10 (0.080) 6/166 NT 7.4% coding (317/414 nt) holD DNA polymerase III, psi subunit
?NC_000913 4608161 = 134 (1.060)coding (359/414 nt) holD DNA polymerase III, psi subunit
Rejected: Frequency below cutoff threshold.

Only 100 of 167 total aligned reads displayed.

AGAAAAAATCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATT  >  NC_000913/4608021‑4608218
                                                                                                  |                                                                                                   
aGAAAAAATCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGACCCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCg                                                                                                    >  1:3763006/1‑100 (MQ=255)
aGAAAAAATCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCg                                                                                                    >  2:3555164/1‑100 (MQ=255)
 gAAAAAATCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCgg                                                                                                   <  2:222068/100‑1 (MQ=255)
 aggcgtgggcgcgttgttcaatgtggtaagccgccggtaaatcagtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgcgg                                                                                                   >  2:684164‑M1/98‑100 (MQ=255)
  ggcgtgggcgcgttgttcaatgtggtaagccgccggtaaatcagtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgcggc                                                                                                  <  1:905312‑M1/4‑1 (MQ=255)
  ggcgtgggcgcgttgttcaatgtggtaagccgccggtaaatcagtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgcggc                                                                                                  <  1:3501728‑M1/4‑1 (MQ=255)
  ggcgtgggcgcgttgttcaatgtggtaagccgccggtaaatcagtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgcggc                                                                                                  <  2:1464236‑M1/4‑1 (MQ=255)
  ggcgtgggcgcgttgttcaatgtggtaagccgccggtaaatcagtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgcggc                                                                                                  <  1:2979132‑M1/4‑1 (MQ=255)
  ggcgtgggcgcgttgttcaatgtggtaagccgccggtaaatcagtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgcggc                                                                                                  <  1:2933317‑M1/4‑1 (MQ=255)
   gcgtgggcgcgttgttcaatgtggtaagccgccggtaaatcagtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgcggcg                                                                                                 >  2:3086590‑M1/96‑100 (MQ=255)
   aaaaaTCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGgcg                                                                                                 <  2:776936/100‑1 (MQ=255)
   aaaaaTCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGgcg                                                                                                 >  2:1233028/1‑100 (MQ=255)
   aaaaaTCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGgcg                                                                                                 >  2:1280105/1‑100 (MQ=255)
    cgtgggcgcgttgttcaatgtggtaagccgccggtaaatcagtcgtgtcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgCGgcgc                                                                                                >  2:855862‑M1/95‑100 (MQ=255)
    cgtgggcgcgttgttcaatggggtaagaagccggtaaatcagtcgtttcgagggaagaaatcgtgttcatacgtgcaaatttgttgccataaagcggcg                                                                                                 <  1:2324065‑M1/5‑1 (MQ=255)
       aTCGCGATGCTGCCGCAAGGCAGTCACTTCAACAGTCGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCGCAGGTGGCATCACCGGCGCTCa                                                                                             <  1:3200476/100‑1 (MQ=255)
        tCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCAc                                                                                            <  1:589872/100‑1 (MQ=255)
        tCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCAc                                                                                            <  1:1127111/100‑1 (MQ=255)
          gcgATGCTGCCGCAAGGCAGTCACTGCCACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGAAAGGCGTTCAGGTGGCATCACCg                                                                                                    >  1:2621198/1‑90 (MQ=255)
            gATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGAt                                                                                        >  2:2281476/1‑100 (MQ=255)
              tgctgcCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGAttt                                                                                      >  1:703227/1‑100 (MQ=255)
                    cGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGc                                                                                <  2:3339801/100‑1 (MQ=255)
                      cAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCaa                                                                              <  1:2818094/100‑1 (MQ=255)
                        aGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAAc                                                                            <  2:24758/100‑1 (MQ=255)
                        aGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAAc                                                                            >  1:3262798/1‑100 (MQ=255)
                         ggCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAAcc                                                                           <  2:3456905/100‑1 (MQ=255)
                          gCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCGCCGGCGCTCACCGATTTACGGGCAAAccc                                                                          <  2:1516168/100‑1 (MQ=255)
                          gCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAAccc                                                                          >  2:3692935/1‑100 (MQ=255)
                               cACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACgg                                                                     <  2:2522333/100‑1 (MQ=255)
                               cACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACgg                                                                     <  1:1547329/100‑1 (MQ=255)
                               cACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTAGCATCACCGGCACTCACCGATTTACGGGCAAACCCAACgg                                                                     >  2:1160911/1‑100 (MQ=255)
                                aCTGCAACAGTTGGCGGTTGGGTACTGACGAACCCCTATCACTCGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGGAAACCCAACggn                                                                    <  1:3076295/100‑2 (MQ=255)
                                 cTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCa                                                                   <  2:3134997/100‑1 (MQ=255)
                                 cTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCa                                                                   >  1:3307132/1‑100 (MQ=255)
                                  tGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCAc                                                                  <  2:3307151/100‑1 (MQ=255)
                                   gCAACAGTTGGCGGTTGGGTACTGACGATCCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCCACGATTGACTGGCAAACCCAACCGCa                                                                   >  1:3462589/1‑98 (MQ=255)
                                       cAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGcgcc                                                             >  2:2700358/1‑100 (MQ=255)
                                       aaatcagtcgtttcgacggaagaaatcgtgttcatatgtgcaaatttgttgccataacgCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGcgcc                                                             >  1:3393653‑M1/60‑100 (MQ=255)
                                        aatcagtcgtttcgagggaagaaatcgtgtgcatatgtgcaaatttgttgccataacgCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGcgccg                                                            >  2:2162631‑M1/59‑100 (MQ=255)
                                         atcagtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGcgccgc                                                           >  2:577091‑M1/58‑100 (MQ=255)
                                          ttGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCcgcg                                                          <  2:1690424/100‑1 (MQ=255)
                                           tGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGt                                                         >  1:723517/1‑100 (MQ=255)
                                            agtcgtttcgagggaagaaatcgtgttcatatgtgcaaatttgttgccataacgCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGtt                                                        >  1:1913332‑M1/55‑100 (MQ=255)
                                             gCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTa                                                       <  2:1104736/100‑1 (MQ=255)
                                              cGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTAt                                                      <  2:2843415/100‑1 (MQ=255)
                                               ggTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATg                                                     <  1:657990/100‑1 (MQ=255)
                                               ggTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATg                                                     <  2:1241479/100‑1 (MQ=255)
                                               ggTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATg                                                     <  1:47716/100‑1 (MQ=255)
                                                 ttGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGc                                                   <  1:3688735/100‑1 (MQ=255)
                                                  tGGGTACTGACGCACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGAGGTACGGGCAAACCCAACGGCACGCGCCGCGGTATTGc                                                   >  1:865050/1‑99 (MQ=255)
                                                  tGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGca                                                  >  2:2955208/1‑100 (MQ=255)
                                                     ntACTGACGAACCGCTATCACTAGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGcaaca                                               >  1:2209501/2‑100 (MQ=255)
                                                     gTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGcaaca                                               >  2:2473314/1‑100 (MQ=255)
                                                        cTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAAt                                            >  2:768554/1‑100 (MQ=255)
                                                        cTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAAt                                            >  2:2558665/1‑100 (MQ=255)
                                                        cTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAAt                                            >  2:2106707/1‑100 (MQ=255)
                                                          gACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAAttt                                          >  1:3379469/1‑100 (MQ=255)
                                                          gACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAAttt                                          >  2:2638207/1‑100 (MQ=255)
                                                           aCGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTg                                         <  2:3144283/100‑1 (MQ=255)
                                                           aCGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTg                                         <  1:1720806/100‑1 (MQ=255)
                                                            cGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGc                                        >  1:1828933/1‑100 (MQ=255)
                                                            cGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCCATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAAttt                                          >  1:2087822/1‑98 (MQ=255)
                                                             gAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGca                                       <  2:1822946/100‑1 (MQ=255)
                                                              aaCCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGcac                                      <  1:107281/100‑1 (MQ=255)
                                                              aaCCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGca                                       <  1:3460818/99‑1 (MQ=255)
                                                               aCCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGcaca                                     <  2:2547482/100‑1 (MQ=255)
                                                                 cGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACata                                   <  1:940066/100‑1 (MQ=255)
                                                                   cTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATg                                 <  1:3079482/100‑1 (MQ=255)
                                                                     aTCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGaa                               <  2:1931782/100‑1 (MQ=255)
                                                                       cACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAaca                             >  2:630453/1‑100 (MQ=255)
                                                                       cACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAaca                             >  1:234954/1‑100 (MQ=255)
                                                                       cACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAaca                             >  1:3346157/1‑100 (MQ=255)
                                                                       cACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAaca                             >  1:831510/1‑100 (MQ=255)
                                                                       cACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGAGCCGCGTTATGGCAACAAATTTGCACATATGAac                              >  2:1992041/1‑99 (MQ=255)
                                                                        aCTGGAAGGCGCTCAGGTTGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAacac                            <  1:1427267/100‑1 (MQ=255)
                                                                         cTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACg                           >  1:3664555/1‑100 (MQ=255)
                                                                          tGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGa                          >  2:3029329/1‑100 (MQ=255)
                                                                           ggAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGAt                         <  2:631353/100‑1 (MQ=255)
                                                                             aaGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGAttt                       <  1:887514/100‑1 (MQ=255)
                                                                             aaGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGAt                         >  1:1202200/1‑98 (MQ=255)
                                                                              aGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATttc                      <  2:3747582/100‑1 (MQ=255)
                                                                               ggCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATttct                     >  2:2889551/1‑100 (MQ=255)
                                                                                 cgcTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATttcttc                   <  1:1993713/100‑1 (MQ=255)
                                                                                 cgcTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATttcttc                   >  2:2421640/1‑100 (MQ=255)
                                                                                   cTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTccc                 <  1:2738855/100‑1 (MQ=255)
                                                                                     cAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACAAGAtcggaagagcg               >  1:1872074/1‑90 (MQ=255)
                                                                                      aGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCg              >  2:755209/1‑100 (MQ=255)
                                                                                      aGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCg              >  2:1309836/1‑100 (MQ=255)
                                                                                        gTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGaa            <  2:2196220/100‑1 (MQ=255)
                                                                                          ggCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAAc          <  2:418800/100‑1 (MQ=255)
                                                                                          ggCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAAc          <  1:3131161/100‑1 (MQ=255)
                                                                                             aTCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATCTGCACATATGAACACGATTTCTTCCCTCGAAACGa        >  1:255256/1‑99 (MQ=255)
                                                                                              tCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACt      >  2:1401848/1‑100 (MQ=255)
                                                                                               cACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTg     >  2:3606902/1‑100 (MQ=255)
                                                                                                aCCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGa    >  2:3607632/1‑100 (MQ=255)
                                                                                                aCCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGa    <  1:2412293/100‑1 (MQ=255)
                                                                                                 ccGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGCACACGATTTCTTCCCTCGAAACGACt      >  1:1331848/1‑97 (MQ=255)
                                                                                                 ccGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGa    <  1:1524145/99‑1 (MQ=255)
                                                                                                 ccGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGAt   >  1:1044700/1‑100 (MQ=255)
                                                                                                  CGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGAtt  <  1:503547‑M1/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
AGAAAAAATCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATT  >  NC_000913/4608021‑4608218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.