| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 689269 = | NA (NA) | 5 (0.040) | 4/166 | NT | NA | noncoding (6/34 nt) | REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 689297 = | NA (NA) | noncoding (34/34 nt) | REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/689373‑689269‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATG > NC_000913/689297‑689395 GTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTA < 1:1777589/100‑1GTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTA > 2:3091809/1‑100GTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTA > 2:1615882/1‑100 TGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATC > 2:418183/1‑100 TGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATC < 1:2441278/100‑1 GATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCC < 1:899696/100‑1 ATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCG > 2:2697984/1‑100 ATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCG < 2:2165841/100‑1 CGCTCACCGGATGCGGCATCAGTGCATTATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCA > 1:943731/1‑100 GCTCACCGGATGCGGCATCAGTGCATTATCCGGTGAGCGTGCCGAAATATGGGCTGTGTCTCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAG > 1:1655974/1‑100 TCACCGGATGCGGCATCAGTGCATTATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGAC < 1:1663751/100‑1 CACCGGATGCGGCATCAGTGCATTATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACa > 2:1663760/1‑99 CACCGGATGCGGCATCAGTGCATTATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGAGAACCAGGGATAATATACGTCGCTGAAGCCGA > 1:1984074/1‑98 TCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAAC > 2:206483/1‑100 TCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAAC > 1:2533127/1‑100 CGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAA > 2:2362201/1‑100 GTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATG > 2:494052/1‑100 GTTGATGAGTCTGCGTCAGCGACGTAAATAATCCCTTCTTATCGTGCCGGAATACATCCCATATTTCGGCACGCTCACCGGATGCGGCATCAGTGCATTATCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/689373‑689269‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATG > NC_000913/689297‑689395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |