New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 689269 =NA (NA)5 (0.040) 4/166 NT NA noncoding (6/34 nt) REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 689297 = NA (NA)noncoding (34/34 nt) REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 191 total aligned reads displayed.

TACTGTGGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGAC  >  NC_000913/689171‑689365
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tACTGTGGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATcc                                                                                                 <  1:3204684/100‑1 (MQ=255)
 ttgtttggttttgctgctgtgttgatgagtctgcgtcagcgacgtaaataatcccttcttatcgtgccggaatacatcccatatttcggcacgctcaCCg                                                                                                >  2:2362201‑M1/98‑100 (MQ=255)
  cTGTGGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCgg                                                                                               >  1:2389682/1‑100 (MQ=255)
  cTGTGGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCgg                                                                                               >  1:1178951/1‑100 (MQ=255)
  cTGTGGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCgg                                                                                               >  1:932608/1‑100 (MQ=255)
  cTGTGGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCgg                                                                                               >  1:3221811/1‑100 (MQ=255)
  cTGTGGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCg                                                                                                >  1:2694505/1‑99 (MQ=255)
  cTGTAGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCg                                                                                                <  2:2818691/99‑1 (MQ=255)
   gtttggttttgctgctgtgttgatgagtctgcgtcagcgacgtaaataatcccttcttatcgtgccggaatacatcccatatttcggcacgctcaCCGGa                                                                                              >  1:2533127‑M1/96‑100 (MQ=255)
     tggtgCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATa                                                                                            <  2:475997/100‑1 (MQ=255)
      ggtgCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGAtca                                                                                           >  1:2313865/1‑98 (MQ=255)
      ggtgCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATaa                                                                                           >  1:1026956/1‑100 (MQ=255)
        tgCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATg                                                                                         >  2:2922665/1‑100 (MQ=255)
        tgCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATg                                                                                         >  1:830453/1‑100 (MQ=255)
        tgCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATg                                                                                         <  2:745936/100‑1 (MQ=255)
        tgCAACTAGGTTGTACTGATGCTGGTTCAGGGTTTGCCTTGTATAACAAAGCAATAAATGTGCCGAAGTTGGATAGGAGAATATTGGGATCAGGATAAt                                                                                          >  1:2451173/1‑99 (MQ=255)
         gCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGc                                                                                        >  2:501416/1‑100 (MQ=255)
            aCTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACt                                                                                     >  1:3521347/1‑100 (MQ=255)
            aCTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACt                                                                                     <  2:3194459/100‑1 (MQ=255)
            aCTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACt                                                                                     <  1:1464351/100‑1 (MQ=255)
             cTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTg                                                                                    >  2:1216592/1‑100 (MQ=255)
                ggTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATg                                                                                 <  2:315262/100‑1 (MQ=255)
                   tGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAGAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCg                                                                              >  1:2040970/1‑100 (MQ=255)
                   tGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCg                                                                              >  2:2013064/1‑100 (MQ=255)
                   tGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCg                                                                              <  1:1550680/100‑1 (MQ=255)
                   tGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCg                                                                              <  1:596495/100‑1 (MQ=255)
                    gTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGc                                                                             >  2:2258190/1‑100 (MQ=255)
                      aCTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCAt                                                                           <  1:3485662/100‑1 (MQ=255)
                       cTGATGCTGTTTCAGGGTTTGTCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATc                                                                          >  1:441698/1‑100 (MQ=255)
                         gATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCg                                                                        >  1:904765/1‑100 (MQ=255)
                          aTGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCgg                                                                       <  1:501410/100‑1 (MQ=255)
                           tGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGt                                                                      <  2:3737262/100‑1 (MQ=255)
                           tGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGt                                                                      >  2:2969139/1‑100 (MQ=255)
                             cTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGa                                                                    >  1:592995/1‑100 (MQ=255)
                             cTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCAGGATAATGCACTGATGGCGCATCAGGTGa                                                                    >  1:1577943/1‑100 (MQ=255)
                              tcggcttcagcgacgtatattatccctggttctcgtgccggaatacatcccatatttcggcacgctcaCCGGATAATGCACTGATGCCGCATCCGGTg                                                                     >  1:1984074‑M1/69‑98 (MQ=255)
                              tGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAg                                                                   >  2:797330/1‑100 (MQ=255)
                              tGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAg                                                                   >  1:2723553/1‑100 (MQ=255)
                              tGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAg                                                                   <  2:303323/100‑1 (MQ=255)
                               gTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGc                                                                  >  1:1235236/1‑100 (MQ=255)
                               gTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGc                                                                  >  2:1547238/1‑100 (MQ=255)
                               ctgcgtcagcgacgtaaataatcccttcttatcgtgccgagacacagcccatatttcggcacgctcaCCGGATAATGCACTGATGCCGCATCCGGTGAGc                                                                  >  1:1655974‑M1/68‑100 (MQ=255)
                                 ttCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGt                                                                >  1:2811632/1‑100 (MQ=255)
                                    aGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGcc                                                             >  2:40414/1‑100 (MQ=255)
                                     gggTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCg                                                            <  2:623714/100‑1 (MQ=255)
                                       gTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGaa                                                          >  2:2849084/1‑100 (MQ=255)
                                          tGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAata                                                       <  1:3039670/100‑1 (MQ=255)
                                           gCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAatat                                                      >  2:3778948/1‑100 (MQ=255)
                                           gCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAatat                                                      >  2:1677776/1‑100 (MQ=255)
                                            ccTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATg                                                     <  1:1867787/100‑1 (MQ=255)
                                             cTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATgg                                                    <  1:358596/100‑1 (MQ=255)
                                              ttGTATAACAAAGCAATAAATGTGCAAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGTACGGATGCCGCATCCGGTGAGCGTGCCGAAATATggg                                                   <  1:3393950/100‑1 (MQ=255)
                                              ttGTATAACAAAGCAAGAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATggg                                                   <  2:1583995/100‑1 (MQ=255)
                                                gTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGAt                                                 <  2:932615/100‑1 (MQ=255)
                                                gTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGAt                                                 <  1:2214179/100‑1 (MQ=255)
                                                 tataACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATg                                                >  2:1180674/1‑100 (MQ=255)
                                                 tataACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATg                                                >  2:2105151/1‑100 (MQ=255)
                                                   taACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGGAatacatcccata                                              >  1:3740721/1‑91 (MQ=255)
                                                   taACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTa                                              >  2:3684648/1‑100 (MQ=255)
                                                   taACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTa                                              >  1:107711/1‑100 (MQ=255)
                                                    aaCAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTAt                                             >  1:1821178/1‑100 (MQ=255)
                                                     aaaaaGCAATAGATGTGCAAAAGTTGTAAAGGAGAATATTGCTATCAGGATAATGCACTGATGCCGCATCAGGTGAGCGTGCCGAAATATCGACTGTAtt                                            >  1:1314947/3‑100 (MQ=255)
                                                      cAAAGCAATAGATGTGCCAACGCTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTAtt                                            >  1:2278410/1‑99 (MQ=255)
                                                       aaaGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTcc                                          <  2:3433516/100‑1 (MQ=255)
                                                        aaGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCg                                         <  2:2402456/100‑1 (MQ=255)
                                                        aaGCAATAGATGTGCCAAAGTTGGATAGGAGAACATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCg                                         >  1:1395814/1‑100 (MQ=255)
                                                         aGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCgg                                        <  2:397329/100‑1 (MQ=255)
                                                         aGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCgg                                        <  2:574915/100‑1 (MQ=255)
                                                          gCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGc                                       >  1:2947597/1‑100 (MQ=255)
                                                          gCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGc                                       <  1:4704/100‑1 (MQ=255)
                                                          gCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGc                                       >  1:994938/1‑100 (MQ=255)
                                                           cAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCa                                      <  2:3335518/100‑1 (MQ=255)
                                                            aaTAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCAc                                     <  2:2518216/100‑1 (MQ=255)
                                                               aGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGAt                                  <  2:904772/100‑1 (MQ=255)
                                                                gATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGAt                                  >  2:1367482/1‑99 (MQ=255)
                                                                gATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATa                                 >  1:194440/1‑100 (MQ=255)
                                                                gATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATa                                 <  1:399544/100‑1 (MQ=255)
                                                                gATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATa                                 >  2:1882494/1‑100 (MQ=255)
                                                                  tgtgCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaag                               >  2:3639369/1‑100 (MQ=255)
                                                                    tgCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaagaa                             <  2:1383801/100‑1 (MQ=255)
                                                                    tgCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaagaa                             >  2:1634204/1‑100 (MQ=255)
                                                                     gCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATaagaag                            >  2:1410713/1‑100 (MQ=255)
                                                                      ccAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAgg                           >  2:3296055/1‑100 (MQ=255)
                                                                       cAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAggg                          >  1:953560/1‑100 (MQ=255)
                                                                        aaaGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGa                         <  1:284293/100‑1 (MQ=255)
                                                                        aaaGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGa                         >  1:2601897/1‑100 (MQ=255)
                                                                         aaGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGat                        <  2:2904327/100‑1 (MQ=255)
                                                                          aGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGatt                       <  2:3402184/100‑1 (MQ=255)
                                                                           gTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGatta                      >  2:2276877/1‑100 (MQ=255)
                                                                               gATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTa                  <  2:1812210/100‑1 (MQ=255)
                                                                               gATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTa                  >  1:2731273/1‑100 (MQ=255)
                                                                                aTAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTAc                 <  2:1334075/100‑1 (MQ=255)
                                                                                    gagaATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCg             >  1:700278/1‑100 (MQ=255)
                                                                                          atTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACg       <  2:2313876/100‑1 (MQ=255)
                                                                                           ttGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGGGTCGAAATATGGGATGTATTCCGGCACGTTAAGGAGGGATTATTTAAGTCGCTGACGc      >  1:2477399/1‑100 (MQ=255)
                                                                                             gTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAg    >  1:1708470/1‑100 (MQ=255)
                                                                                             gTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAg    >  1:1380323/1‑100 (MQ=255)
                                                                                               tATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGAc  <  2:289042/100‑1 (MQ=255)
                                                                                               tATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGAc  >  1:1782190/1‑100 (MQ=255)
                                                                                               tATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGAc  <  2:1962041/100‑1 (MQ=255)
                                                                                                  |                                                                                                
TACTGTGGTGCAACTAGGTTGTACTGATGCTGTTTCAGGGTTTGCCTTGTATAACAAAGCAATAGATGTGCCAAAGTTGGATAGGAGAATATTGTTATCCGGATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGAC  >  NC_000913/689171‑689365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.