| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 792267 | NA (NA) | 11 (0.090) | 6/164 | NT | NA | noncoding (4/34 nt) | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 792297 | NA (NA) | noncoding (34/34 nt) | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
ATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGgccggag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/792169‑792267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT < NC_000913/792297‑792192 ATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGG > 1:1032580/1‑100 TGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGC < 1:1900207/100‑1 TGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGC > 1:411969/1‑100 GCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCC > 1:3084238/1‑100 GCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCC < 1:3305260/100‑1 CGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCG > 1:9400/1‑100 CGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCG > 1:2437621/1‑100 GCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTATATATAAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGG < 1:1698997/100‑1 CGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGA > 2:96126/1‑100 CGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGA < 2:3031138/100‑1 GGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGG < 1:1498351/100‑1 GGGTTGATGAGTGAGTGCGCTTTTTATCTGAAAAAAGGCGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGG < 1:2503060/100‑1 GGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGC < 2:117925/100‑1 GTTTATTAATGATTGGGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCC < 1:3289918/100‑1 GTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCC < 2:3234679/100‑1 GTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCC < 2:1605979/100‑1 TTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGTCA < 1:2421236/100‑1 TTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCA < 2:1733220/100‑1 ATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACG < 2:3031183/100‑1 ATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACG < 1:1445021/100‑1 ATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATACGTCGAACCGTTGGCCGGAGGCGGCCTTAGCCCCCTCTCCGGCCAAC < 1:481321/99‑1 GCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACC < 1:3399929/100‑1 GCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACC > 2:1588096/1‑100 CCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCC < 1:1367461/100‑1 CCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTAAGATAAAAAACGCAATCATTCATAAACC > 1:3239077/1‑99 CCGGAGGCGGCCTTAGCACCCTCTACGGCCAAAGGTTCGACGCATGCAGGCATGAAACGGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCC > 2:322246/1‑100 AGGCGGCGTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGGAGGCATGAAACCGCGGCTTGTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTG > 1:2074457/1‑100 AGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTG < 1:3656747/100‑1 GGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGn < 1:725058/100‑2 GGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT > 2:2551658/1‑100 GGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT > 1:354959/1‑100 GGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT < 2:886111/100‑1 ATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGgccggag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/792169‑792267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGGCGGCCTTAGCACCCTCTCCGGCCAACGGTTCGACGCATGCAGGCATGAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGT < NC_000913/792297‑792192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |