New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	377335 =	NA (NA)	17 (0.130)	8/164	NT	NA	noncoding (1/187 nt)	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	377368 =	NA (NA)					noncoding (34/187 nt)	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences

TCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/377440‑377335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGG  >  NC_000913/377368‑377466                                                                                                                                                                                                               TCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCA                                                                                                           <  1:2168557/100‑1  CAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACACGCATAGCGTCGCAT                                                                                                          >  1:754822/1‑100   AGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATACGACGCGCATAGCGTCGCA                                                                                                           >  2:2396622/1‑98   AGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATC                                                                                                         <  1:200284/100‑1   AGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCGTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATC                                                                                                         >  2:2431253/1‑100    GGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCA                                                                                                        <  2:2965004/100‑1    GGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCA                                                                                                        >  2:2746570/1‑100    GGCATGGCGCACGACTGCCCGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCA                                                                                                        <  2:3484580/100‑1     gctTGGCGCACGACTGCCGGATGCGGCGTGAACGTCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCA                                                                                                        <  2:2331081/96‑1     GCATGGCGCACGACTGCCGGATGCGGCGTGAACACCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGGCTGATAAGACGCGCATAGCGTCGCATCAG                                                                                                       >  2:2372954/1‑100      CATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGG                                                                                                      <  1:824691/100‑1      CATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGG                                                                                                      >  2:17691/1‑100      CATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGG                                                                                                      >  1:2841024/1‑100        tgtCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGC                                                                                                     <  2:3505873/96‑1         GGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGC                                                                                                     <  2:1022723/98‑1            GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGC                                                                                                     <  2:888179/95‑1            GCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGG                                                                                                      <  2:1152536/94‑1                                                                    CCGTAGGCCTGATAAGACGCGCATAGGGTCGCATCAGGCCTACGGATTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTG                                        >  1:171140/1‑100                                                                    CCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTG                                        >  1:929123/1‑100                                                                      GTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCt                                      >  2:1408412/1‑99                                                                        AGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCC                                    >  1:3446602/1‑100                                                                        AGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGC                                     >  1:3822570/1‑99                                                                         GGCCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCA                                   >  1:2164348/1‑100                                                                         GGCCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCA                                   >  1:615176/1‑100                                                                          GCCTGATAAGACGCGCATAGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTTTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAT                                  >  2:3583977/1‑100                                                                          GCCTGATAAGACGCGCATAGCGTCGCATTAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGTCGTTCACGCCGCATCCGGCAGTCGTGCGCCA                                   >  2:914454/1‑99                                                                          GCCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAT                                  >  1:160565/1‑100                                                                          GCCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCAT                                  >  1:2398272/1‑100                                                                           CCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATG                                 >  1:1121917/1‑100                                                                           CCTGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGCTTATGGGCGAAGTGTAGACCGGATAAGCCGCTCACCCCGCATCCGGCAGTCGTGCGCCAT                                  >  2:3595371/1‑99                                                                           CCTGATAAGACGCGCAAAGCGTCGCATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCtattat                                 >  2:2376271/1‑94                                                                             TGATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCC                               >  1:2275105/1‑100                                                                              GATAAGACGCGCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCT                              >  2:2009867/1‑100                                                                                        GCATAGCGTCGCATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGC                    >  1:3360506/1‑100                                                                                                    ATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTT        <  2:2350555/100‑1                                                                                                    ATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTT        >  2:1535733/1‑100                                                                                                    ATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCGTTGCGCGTC          >  2:3172047/1‑98                                                                                                     TCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTA       <  2:193039/100‑1                                                                                                     TCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTA       <  1:2202714/100‑1                                                                                                      CAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTA       >  2:1563741/1‑99                                                                                                       AGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCTTCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATC     <  2:2730853/100‑1                                                                                                       AGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATC     >  1:2988812/1‑100                                                                                                       AGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATC     >  1:46408/1‑100                                                                                                        GGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCA    >  2:1635065/1‑100                                                                                                        GGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCA    <  1:3666343/100‑1                                                                                                        GGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCA    <  1:2606272/100‑1                                                                                                         GCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAG   >  1:3807887/1‑100                                                                                                         GCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAG   >  1:382378/1‑100                                                                                                         GCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAG   >  1:1584248/1‑100                                                                                                         GCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAG   >  1:1299147/1‑100                                                                                                         GCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCACCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAG   <  1:3547800/100‑1                                                                                                         GCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGAGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAG   >  2:2112190/1‑100                                                                                                          CCTACGGTTTATGGGCGACGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGACATGCCTGATGCGTCGCTTTGCGCGTCTAATC     >  2:1381755/1‑97                                                                                                          CCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATTCCTGATGCGACGCTTTGCGCGTCTTATCAGG  <  1:2668428/100‑1                                                                                                          CCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGG  >  1:2826973/1‑100                                                                                                          CCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGG  >  1:434488/1‑100                                                                                                          CCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGG  >  1:435600/1‑100                                                                                                          CCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGGCGTGCGCCATCCCTGACGCGACGCTTTGCGCGTCTTATCAG   >  2:3358466/1‑99                                                                                                                                                                                                               TCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/377440‑377335 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGG  >  NC_000913/377368‑377466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.