New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 377335 =NA (NA)17 (0.130) 8/164 NT NA noncoding (1/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 377368 = NA (NA)noncoding (34/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 224 total aligned reads displayed.

CGCGCTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCA  >  NC_000913/377236‑377433
                                                                                                   |                                                                                                  
cctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagg                                                                                                    >  1:434488‑M1/100‑100 (MQ=255)
 ctgataagacgcgcaaagcgtcgcgtcagggatggcgcacgcctgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagg                                                                                                    >  2:3358466‑M1/99‑99 (MQ=255)
 ctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGc                                                                                                   >  1:1584248‑M1/99‑100 (MQ=255)
 ctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGc                                                                                                   >  1:3807887‑M1/99‑100 (MQ=255)
 ctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGc                                                                                                   >  1:382378‑M1/99‑100 (MQ=255)
 ctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGc                                                                                                   >  1:1299147‑M1/99‑100 (MQ=255)
  cgcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGcc                                                                                                  >  1:968178/1‑100 (MQ=255)
   gattagacgcgcaaagcgacgcatcaggcatgtcgcacgactgccggatgcggcgtgaacgccttatccggtctacacgtcgcccataaaccgtagg                                                                                                    >  2:1381755‑M1/97‑97 (MQ=255)
   gataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCt                                                                                                 >  1:46408‑M1/97‑100 (MQ=255)
   gataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCt                                                                                                 >  1:2988812‑M1/97‑100 (MQ=255)
   gataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggaagcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCt                                                                                                 <  2:2730853‑M1/4‑1 (MQ=255)
     taagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTg                                                                                                >  2:1563741‑M1/95‑99 (MQ=255)
     taagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGa                                                                                               <  1:2202714‑M1/6‑1 (MQ=255)
      cAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGAt                                                                                              >  2:141152/1‑100 (MQ=255)
      cAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGAt                                                                                              >  1:955049/1‑100 (MQ=255)
      aagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGAt                                                                                              <  2:2350555‑M1/7‑1 (MQ=255)
        gcgcCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGc                                                                                            <  2:3196686/100‑1 (MQ=255)
           ctgAAGAGCAGGAGGAAGACGACCCGTATGCGGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGAc                                                                                         >  1:2655853/3‑100 (MQ=255)
             gAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGc                                                                                       >  1:1369007/1‑100 (MQ=255)
               agagCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa                                                                                     <  2:927350/100‑1 (MQ=255)
               agagCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa                                                                                     <  1:563467/100‑1 (MQ=255)
                   cAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg                                                                                 <  1:3513677/100‑1 (MQ=255)
                     ggATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg                                                                               >  2:856567/1‑100 (MQ=255)
                     ggATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCAATGcgcg                                                                               >  1:1752340/1‑100 (MQ=255)
                      gATGCAGACGACCCGTATGCCGCCTTCAAAGTGCGTGATGATTTGATGTGGTAAACCTAGATAAGTCGTGCGAAGATGCCTGATGCGACGCTATGCGCGt                                                                              <  2:791055/100‑1 (MQ=38)
                      gATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt                                                                              >  2:1901252/1‑100 (MQ=255)
                        tGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt                                                                            <  2:644943/100‑1 (MQ=255)
                         gAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt                                                                           >  1:2319462/1‑100 (MQ=255)
                          aaGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa                                                                          >  1:3669138/1‑100 (MQ=255)
                             ggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCa                                                                       >  1:2275105‑M1/71‑100 (MQ=255)
                              cgacCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg                                                                      >  1:3299613/1‑100 (MQ=255)
                               gacCCGTATGCCGACTACAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg                                                                     <  1:1526615/100‑1 (MQ=255)
                               catggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAgg                                                                     >  1:1121917‑M1/69‑100 (MQ=255)
                               ataatagcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgcccgtaagccgtagGCCTGATGCGACGCTTTGCGCGTCTTATCAgg                                                                     >  2:2376271‑M1/69‑100 (MQ=255)
                                atggcgcacgactgccggatgcggggtgagcggcttatccggtctacacttcgcccataagccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAgg                                                                     >  2:3595371‑M1/68‑99 (MQ=255)
                                acCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGc                                                                    <  1:2060865/100‑1 (MQ=255)
                                acCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGc                                                                    <  2:2622793/100‑1 (MQ=255)
                                 tggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                   >  1:2164348‑M1/67‑100 (MQ=255)
                                 tggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                   >  1:615176‑M1/67‑100 (MQ=255)
                                 cccGTATGCCGACTTCAAAGTGCCTGATGATTTTATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                   <  2:451021/100‑1 (MQ=255)
                                 cccGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGcc                                                                   <  1:3122970/100‑1 (MQ=255)
                                 cccGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGc                                                                    >  2:2968289/1‑99 (MQ=255)
                                  ccGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCt                                                                  >  2:1863131/1‑100 (MQ=255)
                                       tGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGt                                                             <  2:2051322/100‑1 (MQ=255)
                                        gCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGtt                                                            >  1:2513208/1‑100 (MQ=255)
                                        gCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGtt                                                            >  2:1292815/1‑100 (MQ=255)
                                        gCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGtt                                                            >  1:1658556/1‑100 (MQ=255)
                                         ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGttt                                                           >  2:915921/1‑100 (MQ=255)
                                           gACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTAt                                                         <  1:2749036/100‑1 (MQ=255)
                                            aCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATg                                                        <  2:511805/100‑1 (MQ=255)
                                            aCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATg                                                        <  2:1167057/100‑1 (MQ=255)
                                            aCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATg                                                        <  1:880126/100‑1 (MQ=255)
                                              ttCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATggg                                                      <  1:3638937/100‑1 (MQ=255)
                                               tCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGc                                                     <  2:2871970/100‑1 (MQ=255)
                                                  aaGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGaa                                                  >  1:3429140/1‑100 (MQ=255)
                                                   aGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAg                                                 <  1:2102171/100‑1 (MQ=255)
                                                   aGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAg                                                 <  2:2006667/100‑1 (MQ=255)
                                                    gTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                <  1:3020643/100‑1 (MQ=255)
                                                    gTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgt                                                <  2:2840807/100‑1 (MQ=255)
                                                     tGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAgtg                                               <  1:1809421/100‑1 (MQ=255)
                                                      gCCTGATGATGTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCCTCTTATCAGGCCTACGGTTTATGGGCGAAgtgt                                              <  2:2593725/100‑1 (MQ=255)
                                                       ccTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTa                                             >  2:638472/1‑100 (MQ=255)
                                                       ccTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTa                                             <  1:37880/100‑1 (MQ=255)
                                                        cTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAg                                            >  2:821994/1‑100 (MQ=255)
                                                             gatTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCgg                                       >  2:742812/1‑100 (MQ=255)
                                                              atTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGa                                      >  2:913579/1‑100 (MQ=255)
                                                               tttGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTAAGGTTTATGGGCGAAGTGTAGACCGGAt                                     >  2:3791751/1‑100 (MQ=255)
                                                                ttGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATa                                    <  2:3299591/100‑1 (MQ=255)
                                                                 tGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATaa                                   <  1:2835322/100‑1 (MQ=255)
                                                                 tGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATaa                                   >  1:2372966/1‑100 (MQ=255)
                                                                 tGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATACGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATaa                                   >  2:2155446/1‑100 (MQ=255)
                                                                  gATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAg                                  >  1:2408763/1‑100 (MQ=255)
                                                                     gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCg                               >  1:1388109/1‑100 (MQ=255)
                                                                     gtgGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCg                               <  1:512044/100‑1 (MQ=255)
                                                                       ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATaa                                   >  1:1035960/1‑94 (MQ=255)
                                                                       ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                             >  2:2479805/1‑100 (MQ=255)
                                                                       ggTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                             >  2:1339869/1‑100 (MQ=255)
                                                                           aaCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGGTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcg                         >  1:1797969/1‑100 (MQ=255)
                                                                            aCATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgc                        <  1:1262441/100‑1 (MQ=255)
                                                                             cATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgcc                       <  1:2042503/100‑1 (MQ=255)
                                                                              aTAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccg                      <  1:459319/100‑1 (MQ=255)
                                                                                   tAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATcc                 >  2:2224914/1‑100 (MQ=255)
                                                                                   tAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATcc                 >  1:1962323/1‑100 (MQ=255)
                                                                                     aGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCgg               >  2:3566686/1‑100 (MQ=255)
                                                                                      gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc              <  2:1537710/100‑1 (MQ=255)
                                                                                      gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc              <  2:1053475/100‑1 (MQ=255)
                                                                                      gTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc              >  1:106179/1‑100 (MQ=255)
                                                                                       tCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCa             >  2:257914/1‑100 (MQ=255)
                                                                                        cGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAg            <  1:813964/100‑1 (MQ=255)
                                                                                          tGCACAGATGCCTGATTCGACACTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTATACCGGATGCGGCGTGAACGCCTTATCCggtctac          <  2:1721749/100‑6 (MQ=17)
                                                                                           gcgcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCg         >  1:1014682/1‑100 (MQ=255)
                                                                                            cgcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGt        >  1:162210/1‑100 (MQ=255)
                                                                                             gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTg       >  1:1516606/1‑100 (MQ=255)
                                                                                             gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTg       >  1:3911109/1‑100 (MQ=255)
                                                                                             gcAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTg       >  2:2755494/1‑100 (MQ=255)
                                                                                               aGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgcg     <  2:1674886/100‑1 (MQ=255)
                                                                                                gATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgc      >  2:3157175/1‑98 (MQ=255)
                                                                                                   GCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTcgtgcgaca  <  2:3505873‑M1/99‑4 (MQ=255)
                                                                                                   GCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTgc      <  2:888179‑M1/95‑1 (MQ=255)
                                                                                                   GCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGcc   <  2:1022723‑M1/98‑1 (MQ=255)
                                                                                                   |                                                                                                  
CGCGCTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACGGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCGCCA  >  NC_000913/377236‑377433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.