| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2405625 | 97 (0.750) | 18 (0.150) | 12/164 | NT | 16.0% | intergenic (‑553/+78) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | NC_000913 | = 2405660 | 100 (0.840) | intergenic (‑588/+43) | nuoA/lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
TTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2405520‑2405625‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑t‑aaaaaaCGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTCAACCAC < NC_000913/2405660‑2405562 TTTTTCAGGCGATTATGTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCTCTATGCGATGAAGGATTTTTACT < 1:3084343/100‑1 TTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT < 1:1318586/99‑1 TTTCAGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AA > 1:3108560/1‑100 AGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA > 1:350971/1‑100 GGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGAACTATGCGATGAAGGAGTTTTAGT‑AAAAAA > 2:3441076/1‑99 GAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGTACTATGCGATGAAGGATTTTTACT‑AAAAAA‑AAGCCGCTGGGGGTGTTTTAAACCCCA < 2:1981274/100‑1 CTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA‑AAGCCGCTGGGGGTGTTTTAAACCCCAGCGG < 2:2741712/100‑1 CTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA‑AAGCCGCTGGGGGTGTTTTAAACCCCAGCGG < 2:1272028/100‑1 TCTGGTGGTTTAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAACGAGCCGCTGGGGGTTTTTTAAACCCCAGCG < 2:155121/99‑1 TCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA‑AAGCCGCTGGGGGTGTTTTAAACCCCAGCGGC < 1:1491330/100‑1 CTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACTAAAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGG < 2:3586529/100‑1 CTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGC < 1:2447364/100‑1 CTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGC < 1:390620/100‑1 CTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA‑AAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCT < 1:2102184/100‑1 GGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACAATGCGATGAAGGATTTTTACT‑AAAAAA‑AAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTT < 2:2763352/100‑1 cTGAAAAATGAACATTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA‑AAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTT < 2:470813/99‑1 GAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA‑AAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAG > 1:470815/1‑100 AAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGT < 1:730908/100‑1 AATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAA < 1:325117/100‑1 AATGAACAGTTTTGGACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAACGAGCCGCGGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAA < 1:645014/100‑1 ACAGTTTTGTACGTTCTGCACTATGCGATGAAGTATTTTTACT‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATC < 2:975885/100‑1 GTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGGGGGTTTTTTTTAGTAAAAATCCTT < 1:1815891/100‑1 TTTTGTACGTTCTGCACTATGCGATGAAGAATTTTTACT‑AAAAAACGAGCCGCTGGGGGTGTTTTAAATCCCAGCGGCTTTTTTTTAGTAAAAATCCTT < 2:136344/99‑1 T‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTC > 1:961609/1‑100 T‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTC > 1:831202/1‑100 T‑AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTC > 2:2660324/1‑100 AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTCA > 2:2550779/1‑100 AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTCA < 1:2628725/100‑1 AAAAAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCATTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTCA > 1:2042415/1‑100 AAAAACGAGTCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGTATAGTGCAGAACGTACAAAACTGTTCATTTTTCAA < 2:70752/100‑1 AAACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCGTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTCAACC < 1:1708527/100‑1 ACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTCAACCAC < 1:1012571/100‑1 ACGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTCAACCAC > 1:3130309/1‑100 TTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2405520‑2405625‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑t‑aaaaaaCGAGCCGCTGGGGGTGTTTTAAACCCCAGCGGCTTTTTTTTAGTAAAAATCCTTCATCGCATAGTGCAGAACGTACAAAACTGTTCATTTTTCAACCAC < NC_000913/2405660‑2405562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |