BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2405625	97 (0.750)	18 (0.150)	12/164	NT	16.0%	intergenic (‑553/+78)	nuoA/lrhA	NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes
*	?	NC_000913	= 2405660	100 (0.840)	18 (0.150)	12/164	NT	16.0%	intergenic (‑588/+43)	nuoA/lrhA	NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes

Only 100 of 160 total aligned reads displayed.

AGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATC  >  NC_000913/2405526‑2405724

 ggCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑aaaaaaa                                                                                                    >  2:3575708/1‑100 (MQ=255)

 ggCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑aaaaaaa                                                                                                    >  2:2515547/1‑100 (MQ=255)

   cGATTATTTGTGCGTTCGGGACGTGAATGTCTGGTGGTTAAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAg                                                                                                  <  1:2415223/100‑1 (MQ=255)

     attattTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGcc                                                                                                <  1:1848568/100‑1 (MQ=255)

       tattTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGc                                                                                              >  1:2057579/1‑100 (MQ=255)

           tgtgCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTggg                                                                                          >  1:1174665/1‑100 (MQ=255)

           tgtgCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCAATGAAGGATTTTTACT‑AAAAAAAAGCCGCTggg                                                                                          >  1:3312426/1‑100 (MQ=255)

             tgCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGt                                                                                        >  1:1097305/1‑100 (MQ=255)

             tgCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGt                                                                                        >  2:2587438/1‑100 (MQ=255)

              gCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGtt                                                                                       >  1:16434/1‑100 (MQ=255)

                  tCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAATTTTGTACGTTCTGCACTATGCGATGAAAGATTTTAAAA‑AAAAAAAAGCCGCTGGGGTTTaaa                                                                                   <  2:533427/100‑1 (MQ=255)

                     ggACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAaca                                                                                <  2:2356015/100‑1 (MQ=255)

                      gACGTGAATCTCTGGTGGTTAAAAAATGAACAGTATTGTACGTTCTGCACTATGCGATGAAGGATAAAAAAA‑AAAAAAAAGCCGCTGGGGTTTAAAac                                                                                 <  2:1854283/98‑1 (MQ=255)

                       aCGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACAcc                                                                              <  1:3455055/100‑1 (MQ=255)

                        cGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACAccc                                                                             <  2:3052224/100‑1 (MQ=255)

                        cGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACAccc                                                                             >  1:2377230/1‑100 (MQ=255)

                        cGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACAccc                                                                             >  1:2434157/1‑100 (MQ=255)

                         gTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAGACAcccc                                                                            <  1:1908261/100‑1 (MQ=255)

                          tGAATCTCTGGTGGTTGAAAAATGAACAGATCTGTACGTTCTGCACTATGCAATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGGTTAAAACAccccc                                                                           >  2:2297347/1‑100 (MQ=255)

                           gAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGTACTATGCGATGAAGGATTTTTACT‑AAAAAAaagccgctgggggtgttttaaacccca                                                                          <  2:1981274‑M1/100‑28 (MQ=255)

                           gAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAacagatcgg                                                                          >  1:2524682/1‑94 (MQ=255)

                            aaTCTCTGGTGGTTGAAAAATGAACAGTTCTGTAAGTGCTGCACTAAGCGATGAAGGGTATTGACT‑AAAAAACAGCGGCTAGGGTTTAAAaca                                                                                >  2:1597604/1‑93 (MQ=255)

                              tctcTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCg                                                                       <  1:1953087/100‑1 (MQ=255)

                              tctcTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCg                                                                       <  1:388900/100‑1 (MQ=255)

                               ctctGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAaagccgctgggggtgttttaaaccccagcgg                                                                      <  2:2741712‑M1/100‑32 (MQ=255)

                               ctctGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAaagccgctgggggtgttttaaaccccagcgg                                                                      <  2:1272028‑M1/100‑32 (MQ=255)

                                tctGGTGGTTTAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAcgagccgctgggggttttttaaaccccagcg                                                                      <  2:155121‑M1/99‑32 (MQ=255)

                                tctGGTGGTTGAAAAATTAACAGTTTTGTATTTTTTTTACTATGCAATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGc                                                                     <  1:928478/100‑1 (MQ=255)

                                tctGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAaagccgctgggggtgttttaaaccccagcggc                                                                     <  1:1491330‑M1/100‑33 (MQ=255)

                                tctGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCgg                                                                      >  2:3257635/1‑99 (MQ=255)

                                 ctGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACTAAAAAAAcgagccgctgggggtgttttaaaccccagcgg                                                                     <  2:3586529‑M1/100‑33 (MQ=255)

                                    gtggtTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGt                                                                 <  1:1012571‑M2/100‑2 (MQ=255)

                                    gtggtTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGt                                                                 >  1:3130309‑M2/1‑99 (MQ=255)

                                      ggtTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAACGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGttt                                                               <  1:1708527‑M2/100‑4 (MQ=255)

                                        ttGAAAAATGAACAGTTTTGTACGTTCTGCACTATACGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGACTCGttttt                                                             <  2:70752‑M2/100‑6 (MQ=255)

                                        ctgAAAAATGAACATTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAaagccgctgggggtgttttaaaccccagcggctttttttt                                                             <  2:470813‑M1/99‑41 (MQ=255)

                                         tGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAATGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGtttttt                                                            >  1:2042415‑M2/1‑94 (MQ=255)

                                         tGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGtttttt                                                            <  1:2628725‑M2/100‑7 (MQ=255)

                                          gAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGtttttta                                                           >  1:961609‑M2/1‑93 (MQ=255)

                                           aaaaaTGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTac                                                          <  2:1994161/100‑1 (MQ=255)

                                           aaaaaTGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAACCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTac                                                          >  2:393542/1‑100 (MQ=255)

                                            aaaaTGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAcgagccgctgggggtgttttaaaccccagcggcttttttttagt                                                         <  1:730908‑M1/100‑45 (MQ=255)

                                            aaaaTGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTaca                                                         >  2:2525429/1‑100 (MQ=255)

                                             aaaTGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTacac                                                        <  1:3207571/100‑1 (MQ=255)

                                             aaaTGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTacac                                                        <  1:559546/100‑1 (MQ=255)

                                             aaaTGAACAGTTTTGTACGTTCTGCACGATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTacan                                                        <  1:3083460/100‑2 (MQ=255)

                                              aaTGAACAGTTTTGGACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAcgagccgcggggggtgttttaaaccccagcggcttttttttagtaa                                                       <  1:645014‑M1/100‑47 (MQ=255)

                                                 gAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTAtt                                                    >  2:1869507/1‑100 (MQ=255)

                                                  aaCAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTg                                                   <  1:2149259/100‑1 (MQ=255)

                                                   aCAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGt                                                  >  1:2618862/1‑100 (MQ=255)

                                                   aCAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGt                                                  >  2:694995/1‑100 (MQ=255)

                                                    cAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGtc                                                 >  2:2596150/1‑100 (MQ=255)

                                                    cAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGtc                                                 >  2:974009/1‑100 (MQ=255)

                                                         ttGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAgg                                            >  2:1145039/1‑100 (MQ=255)

                                                           gTAGGTTCTGCACTGTGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTACAACACCCCCAGCGGCTCGTTTTTTACACTGTTGTCTCAGGaa                                          <  2:3312401/100‑1 (MQ=255)

                                                           gTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGaa                                          >  1:883288/1‑100 (MQ=255)

                                                           gTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGaa                                          >  1:792254/1‑100 (MQ=255)

                                                            tACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAAt                                         >  2:532341/1‑100 (MQ=255)

                                                             aCGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAAtt                                        >  1:2148202/1‑100 (MQ=255)

                                                              cGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATta                                       <  1:2657945/100‑1 (MQ=255)

                                                               gTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATtat                                      >  1:1344396/1‑100 (MQ=255)

                                                                ttCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATtatc                                     <  2:2768734/100‑1 (MQ=255)

                                                                 tCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATtatc                                     <  2:2878248/99‑1 (MQ=255)

                                                                  cTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATtatcta                                   <  1:919127/100‑1 (MQ=255)

                                                                  cTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATtatcta                                   <  1:1200491/100‑1 (MQ=255)

                                                                    gCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATtatctat                                  >  1:433064/1‑99 (MQ=255)

                                                                            cGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCg                         >  1:1987182/1‑100 (MQ=255)

                                                                            cGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCg                         >  1:3484445/1‑100 (MQ=255)

                                                                               tGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGAtt                      <  2:2377214/100‑1 (MQ=255)

                                                                                 aaGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTAc                    <  2:2695251/100‑1 (MQ=255)

                                                                                 aaGGATTTTTACT‑AAAAAAAAGCCGCTGGGATTTAAAACACCCCCAGCGGCTCGttttttagtaaaaattcttcatcgcatagtgcagaacgtacaaaa                     <  2:136344‑M2/99‑46 (MQ=255)

                                                                                 aaGGATTTTTACT‑AAAAAAAACCCCCTGGGGTTTAAAACACCCCCAGCGGCTCGttttttagtaaaaatccttcatcgcatagtgcagaacgtacaaaac                    <  1:1815891‑M2/100‑47 (MQ=255)

                                                                                  aGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGGTCGTTTTTTAGACTATTGTCGCAGGAATTATCTATCGTACGTCGATTa                     >  1:3346424/1‑98 (MQ=255)

                                                                                   ggATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTc                  <  2:1632477/100‑1 (MQ=255)

                                                                                    gATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGttttttagtaaaaatacttcatcgcatagtgcagaacgtacaaaactgt                 <  2:975885‑M2/100‑50 (MQ=255)

                                                                                    gATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTACCCCACGAATTCTCTATCGTCCCTCGACTAccc                  >  2:3331647/1‑97 (MQ=255)

                                                                                     aTTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGa                <  1:359035/100‑1 (MQ=255)

                                                                                     aTTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGACAAAGGAAGTATCTATCGTCCGTCGATTACt                   >  2:2980683/1‑97 (MQ=255)

                                                                                      tttttACT‑AAAAAAAAGCCGCTGGGGTTTAAAGCACCGCCAGCTGCTCGTTTTTTACACTATTGTCTCAGGGATTATCTATCGTCCGTCGATTACTCGa                <  2:151805/99‑1 (MQ=255)

                                                                                         ttACT‑AAAAAAAAGCCTCTGACGTTTAAAACACCCCCAGCTGCTCGTTTTTTACACTATTGTCTCATGAATTATCTATCGTCCGTCGATTACTc                  <  2:3148349/94‑1 (MQ=255)

                                                                                         ttACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCCGCGGCTCGttttttagtaaaaatccttcatcgcatagtgcagaacgtccaaaactgttcatt            <  1:645014‑M2/100‑55 (MQ=255)

                                                                                         ttACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGttttttagtaaaaatccttcatcgcatagtgcagaacgtacaaaactgttcatt            <  1:325117‑M2/100‑55 (MQ=255)

                                                                                         ttACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATc            <  1:2976316/100‑1 (MQ=255)

                                                                                           aCT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATcc           <  2:1018551/99‑1 (MQ=255)

                                                                                            cT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTTtttttagtaaaaatccttcatcgcatagtgcagaacgtacaaaactgttcatttttc          >  1:470815‑M2/1‑43 (MQ=255)

                                                                                            cT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCt         >  2:83646/1‑100 (MQ=255)

                                                                                            cT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCCTCCGTCGATTACTCGATATCCCt         >  2:3117807/1‑100 (MQ=255)

                                                                                             t‑AAAAAAcgagccgctgggggtgttttaaaccccagcggcttttttttagtaaaaatccttcatcgcatagtgcagaacgtacaaaactgttcatttttc        >  1:831202‑M1/1‑7 (MQ=255)

                                                                                             t‑AAAAAAcgagccgctgggggtgttttaaaccccagcggcttttttttagtaaaaatccttcatcgcatagtgcagaacgtacaaaactgttcatttttc        >  2:2660324‑M1/1‑7 (MQ=255)

                                                                                             t‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCtt        >  1:842025/1‑100 (MQ=255)

                                                                                               aaaaaacgagccgctgggggtgttttaaaccccagcggcttttttttagtaaaaatccttcatcgcatagtgcagaacgtacaaaactgttcatttttca       >  2:2550779‑M1/1‑6 (MQ=255)

                                                                                               aaaaaaaaGCCGCTGGGGTTTAAAACACCCCCAGCGGCTTtttttagtaaaaatccttcatcgcatagtgcagaacgtacaaaaatgttcatttttcag        <  2:470813‑M2/100‑60 (MQ=255)

                                                                                               aaaaaaaaGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCttt       >  1:1628790/1‑100 (MQ=255)

                                                                                                  aaaaaGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTtcaa    >  2:779893/1‑100 (MQ=255)

                                                                                                  aaaaaGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTtcaa    <  1:83646/100‑1 (MQ=255)

                                                                                                  aaaaaGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTCTACACTATTGTCCCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTtcaa    <  1:2875752/100‑1 (MQ=255)

                                                                                                   aaaaGCCGCTTGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTtcaat   <  2:1185592/100‑1 (MQ=255)

                                                                                                    acgagccgctgggggtgttttaaaccccagcggcttttttttagtaaaaatccttcatcgcatagtgcagaacgtacaaaactgttcatttttcaaccac  <  1:1012571‑M1/100‑100 (MQ=255)

                                                                                                    aaaGCCGCTGGGGTTTAAAACACCCCCAGCGGCTTtttttagtaaaaatccttcatcgcattgtgcagaacgtacaaaactgttcatttttcaaccacc   <  2:2763352‑M2/100‑65 (MQ=255)

                                                                                                    aaaGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTtcaatc  <  1:2512027/100‑1 (MQ=255)

AGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGCGATGAAGGATTTTTACT‑AAAAAAAAGCCGCTGGGGTTTAAAACACCCCCAGCGGCTCGTTTTTTACACTATTGTCTCAGGAATTATCTATCGTCCGTCGATTACTCGATATCCCTTTCAATC  >  NC_000913/2405526‑2405724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.