New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3299608158 (1.000)34 (0.240) 11/158 NT 18.7% coding (308/444 nt) yhbP UPF0306 family protein
?NC_000913 = 3299630 156 (1.110)coding (286/444 nt) yhbP UPF0306 family protein

GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3299501‑3299608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaagcgacCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAAC  <  NC_000913/3299630‑3299532
                                                                                                                                                                                                               
GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCGTTCTGGCAACCGG                                                                                                             >  1:3040912/1‑100
GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGG                                                                                                             <  1:3954194/100‑1
 CCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGA                                                                                                            >  2:711015/1‑100
 CCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGA                                                                                                            >  2:267021/1‑100
  CAAATCATTTTTTTACCAAAGCCCAGCGTGTTCTCGGTGAATTTGCTTTCATCGAGCCGGATTTCCCACACCGGGGCCGACCGCATTCTGGCACCCGGA                                                                                                            >  1:90329/1‑99
   AAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAGTTTGATTGCATCGAGCCTGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAA                                                                                                           >  1:1465375/1‑99
   AAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAA                                                                                                          >  1:4132544/1‑100
   AAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAA                                                                                                          >  2:3134192/1‑100
   AAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAA                                                                                                           >  1:2537279/1‑99
    AATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAG                                                                                                         <  1:954734/100‑1
    AATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAG                                                                                                         <  2:2962527/100‑1
     ATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGC                                                                                                        >  1:4233691/1‑100
     ATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGC                                                                                                        <  2:3979208/100‑1
      TCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCG                                                                                                       <  2:2593291/100‑1
      TCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGACAGACAGCATTCTGGCAACCGGca                                                                                                           >  1:1281623/1‑94
       CATTTTTTTACCAAAGCTCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCCGAAAGaca                                                                                                      >  1:2471973/1‑97
       CATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGA                                                                                                      >  2:1399989/1‑100
       CATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGA                                                                                                      >  2:510660/1‑100
       CATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGA                                                                                                      >  2:4364404/1‑100
       CATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCG                                                                                                       >  1:2609276/1‑99
        ATTTTTTTACCAAAGCCCGGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC                                                                                                     <  2:3342115/100‑1
        ATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC                                                                                                     <  1:3134175/100‑1
        ATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC                                                                                                     >  1:2238635/1‑100
                          AGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTAC                                                                                   >  2:2791659/1‑100
                                       TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  2:2471948/100‑1
                                       TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  1:2933349/100‑1
                                       TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  1:2930741/100‑1
                                        tctTTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  2:1982376/97‑1
                                        GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGTAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:184322/100‑1
                                        GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  2:2406616/100‑1
                                        GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  2:3842790/100‑1
                                        GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  2:4197861/100‑1
                                        GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:614421/100‑1
                                        GAATTTGAGTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:4058161/100‑1
                                         AATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCG                                                                    <  1:1195676/100‑1
                                         AATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCG                                                                    <  2:3140675/100‑1
                                         AATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCG                                                                    <  2:3885234/100‑1
                                         AATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCG                                                                    <  1:1601901/100‑1
                                         AATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCG                                                                    <  1:3709906/100‑1
                                         AATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:708604/99‑1
                                          ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  2:456919/100‑1
                                          ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  2:1265261/100‑1
                                          ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  2:4054138/100‑1
                                          ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  1:28579/100‑1
                                          ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  1:2791643/100‑1
                                           tgTGATGTGATCGAGCCGGATGTCCCACACCGGGGCCGACAGCATGCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:1447789/95‑1
                                           TTTGATTTCATGGAGGCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  1:1252336/96‑1
                                           TTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCaga                                                                  >  1:1982368/1‑97
                                           TTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGT                                                                  <  1:31329/100‑1
                                           TTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGT                                                                  <  2:2788117/100‑1
                                           TTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGT                                                                  <  1:3898468/100‑1
                                            TTGATTTCATCGAGTCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  1:2577867/98‑1
                                            TTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTT                                                                 <  1:3100220/100‑1
                                             TGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTG                                                                <  2:2146006/100‑1
                                             TGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGT                                                                  <  1:383504/98‑1
                                              GATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGC                                                               <  1:821473/100‑1
                                                TTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCA                                                             <  2:494761/100‑1
                                                                                                  GGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTC           >  1:3532652/1‑100
                                                                                                  GGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTC           >  1:443282/1‑100
                                                                                                   GAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCA          <  2:4166495/100‑1
                                                                                                   GAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCA          <  2:4166707/100‑1
                                                                                                     AAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACC        <  2:2700692/100‑1
                                                                                                     AAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACC        >  1:3715683/1‑100
                                                                                                     AAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACC        >  1:834704/1‑100
                                                                                                      AGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCG       <  2:3854996/100‑1
                                                                                                      AGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCG       <  2:1580018/100‑1
                                                                                                       GCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGA      >  2:1305383/1‑100
                                                                                                        CGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGAC     <  1:1050021/100‑1
                                                                                                        CGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGAC     <  2:69388/100‑1
                                                                                                        CGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGAC     <  1:2244060/100‑1
                                                                                                        CGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGAC     >  2:3188368/1‑100
                                                                                                         GACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACA    >  1:3912257/1‑100
                                                                                                         GACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACA    <  1:3650815/100‑1
                                                                                                          ACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAA   >  2:47764/1‑100
                                                                                                          ACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAA   >  2:3713751/1‑100
                                                                                                           CCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAAC  <  2:2419792/100‑1
                                                                                                           CCTCGCGCGCAAGGCGGACAATCGGCTCTTGCCGGTTCCGAGAATGCTGTCGGCCCCGGTGTGGTAAATCCGGCTCGATGAAATCAAATTCACCGAC     <  1:4134914/97‑1
                                                                                                                                                                                                               
GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3299501‑3299608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaagcgacCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAAC  <  NC_000913/3299630‑3299532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.