New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3819519155 (0.980)27 (0.190) 12/160 NT 15.2% coding (1652/1683 nt) ligB DNA ligase, NAD(+)‑dependent
?NC_000913 = 3819527 163 (1.150)coding (1644/1683 nt) ligB DNA ligase, NAD(+)‑dependent

TCGGCTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3819412‑3819519
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcagTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGCCAGT  <  NC_000913/3819527‑3819431
                                                                                                                                                                                                             
TCGGCTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTG                                                                                                           >  1:3260595/1‑100
 CGGCTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGC                                                                                                          >  2:325186/1‑100
  GGCTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCT                                                                                                         >  2:301245/1‑100
  GGCTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCT                                                                                                         <  1:4321767/100‑1
   GCTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTG                                                                                                        <  1:590575/100‑1
    CTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGG                                                                                                       <  1:722406/100‑1
    CTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGG                                                                                                       <  1:719662/100‑1
    CTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGG                                                                                                       >  2:4378748/1‑100
    CTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGG                                                                                                       >  2:4090076/1‑100
    CTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTG                                                                                                           >  1:1993947/1‑96
      TTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGC                                                                                                     >  2:2788613/1‑100
      TTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGC                                                                                                     <  1:1183388/100‑1
       TTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCA                                                                                                    >  2:214039/1‑100
       TTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCA                                                                                                    >  2:3799856/1‑100
         TTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAG                                                                                                   <  1:835829/99‑1
                      GGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCC                                                                                     <  1:1542200/100‑1
                         GCTGCGCCTTAGGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGC                                                                                  <  1:1574885/100‑1
                         GCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGC                                                                                  <  1:175634/100‑1
                         GCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGC                                                                                  <  1:4383092/100‑1
                         GCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGC                                                                                  <  1:319939/100‑1
                         GCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGC                                                                                  <  2:3389031/100‑1
                         GCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGC                                                                                  <  1:2059632/100‑1
                         GCTACGCCTTAAGCTGAGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGCTCTGCTGGGCAGTTGGCTGGCTGCCCAGC                                                                                  <  1:3902339/100‑1
                          CTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCA                                                                                 <  1:1398087/100‑1
                          CTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCA                                                                                 <  1:1397869/100‑1
                          CTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCA                                                                                 >  2:1397874/1‑100
                          CTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCA                                                                                 >  2:1398092/1‑100
                           TACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCtg                                                                                <  2:2966364/100‑3
                           TACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAG                                                                                <  2:78211/100‑1
                           TACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAG                                                                                <  2:2046264/100‑1
                           TACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAG                                                                                <  2:1641840/100‑1
                           TACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAG                                                                                <  2:3329207/100‑1
                            ACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCGGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAG                                                                                <  1:1029131/99‑1
                             CGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAGAT                                                                              <  2:3588041/100‑1
                              GCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAGATC                                                                             <  1:1046095/100‑1
                                CTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAGATCAC                                                                           <  2:1584643/100‑1
                                 TTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAGATCAC                                                                           <  1:1579996/99‑1
                                  TAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCAGCTGGGCAGTTGGCTGGCTGCCCAGCAGATCACAG                                                                         <  2:3446116/100‑1
                                   AAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAGATCACAGG                                                                        <  2:52213/100‑1
                                   AAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAGTTGGCTGGCTGCCCAGCAGATCACAGG                                                                        <  2:3672275/100‑1
                                                                                GGTTCAAAACCTGTGATCTGCTGGGCAGCCAGCCAACTGCCCAGCAGATCACAGGTTTTGAACCTTAGAGTCCTTCGTGGCTGTAGTAAAAGACCGGT                             >  1:1911629/1‑98
                                                                                     AAAACCTGTGATCTGCTGGGCAGCCAGCCAACTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCA                      >  1:3189174/1‑100
                                                                                                   GCTGGGCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGC        <  1:258746/100‑1
                                                                                                   GCTGGGCAGTTGGCTGGCTGCCCAGCAGATCAAAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGC        >  2:1836159/1‑100
                                                                                                     TGGGCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGC      >  2:867110/1‑100
                                                                                                     TGGGCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGC      >  2:1011465/1‑100
                                                                                                     TGGGCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGC      >  2:2512621/1‑100
                                                                                                      GGGCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGCC     >  2:2896966/1‑100
                                                                                                       GGCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGCCA    >  2:3944528/1‑100
                                                                                                        GCAGTTGTCTGGCTGCCCAGCAGAGTACAGGTTTTGGACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTTAGGCGTAGCGCCA    <  1:1704463/99‑1
                                                                                                        GCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGCCAG   >  2:4343725/1‑100
                                                                                                        GCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGCCAG   <  2:4375095/100‑1
                                                                                                        GCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGCCAG   <  2:499948/100‑1
                                                                                                         CAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGCCAGT  <  1:1363466/100‑1
                                                                                                                                                                                                             
TCGGCTTTTTTGCCCGCTTACTGGCGCTACGCCTTAAGCTGGGATTACCGGTCTTTTACTACAGCCACGAAGGACACTAAGGTTCAAAACCTGTGATCTGCTGGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3819412‑3819519
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcagTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTTCGTGGCTGTAGTAAAAGACCGGTAATCCCAGCTTAAGGCGTAGCGCCAGT  <  NC_000913/3819527‑3819431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.