| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1428029 = | 157 (1.050) | 45 (0.310) | 11/172 | NT | 22.5% | noncoding (766/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428067 = | 159 (1.100) | noncoding (728/1196 nt) | IS5 | repeat region | |||||
CGAGCATGACCTCAATCAGCTGGGTAATCTGCTTCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1428130‑1428029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCC > NC_000913/1428067‑1428165 CGAGCATGACCTCAATCAGCTGGGTAATCTGCTTCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTG < 1:556589/100‑1 GAGCATGACCTCAATCAGCTGGGTAATCTGCTTCATGGAGCGGAGCAATTTGTCTCAACCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGG > 2:4193607/1‑100 AGCATGACCTCAATCAGCTGGGTAATCTGCTTCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGAGCGCCACAGCTCGAGGAGCTGGC < 1:2758384/100‑1 AGCATGACCTCAATCAGCTGGGTAATCTGCTTCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGC < 1:2975874/100‑1 GCATGACCTCAATCAGCTGGGTAATCTGCTTCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGC > 1:3543891/1‑99 GCATGACCTCAATCAGCTGGGTAATCTGCGTCATGGAGAGGAGCAATTTGGCTCAGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGC < 2:365058/99‑1 GAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTAC > 1:3737647/1‑100 TCAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGA > 1:2081762/1‑100 TCAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGA > 2:1518891/1‑100 TCAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGA > 1:2390654/1‑100 CAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAG > 2:4140292/1‑100 CAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAG > 1:750836/1‑100 CAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAG > 1:3208759/1‑100 CAGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAG > 2:1886263/1‑100 AGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGG > 1:3664265/1‑100 GCCGATGCCGGGTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCGCCATGCAGCAGATGACCCCGCTGATTGAG > 2:687368/1‑98 GCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCCTCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCAAGCTGATTGAGGT > 2:461488/1‑100 GCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTGCATGCAGCAGATTACCAAGCTGATTGAGGT > 2:2509918/1‑100 GCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGT > 2:4125529/1‑100 GCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGT > 1:2673735/1‑100 GCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGT > 1:2034817/1‑100 GCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGT > 2:1803830/1‑100 GCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGT > 1:3771428/1‑100 GCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAG > 2:2752596/1‑98 CCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACACATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTC > 1:1348315/1‑100 CCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAAGAGCT‑GCATCGGCTGAGACAAATTGCTCCCCTCCAAGAAGCAGATTACCCAGCCGATTGACGTCA > 2:1173856/1‑100 CGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAACTTGCTCCTCTCCATGCAGCAGCTTACCCAGCTGATTGCGGTCA > 1:1199850/1‑100 CGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCA > 1:1553249/1‑100 CGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGCGGTCA > 2:351992/1‑100 gagGCCGGGTACCGAGGAGCGCCACAGCGCGAGGAGGTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCAT > 2:3930697/4‑100 GATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCCGCTGATTGAGGTCAT > 2:760528/1‑100 GATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCAT > 2:3695699/1‑100 GATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCAT > 1:2814820/1‑100 GATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCAT > 2:1865247/1‑100 GATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCA > 2:65043/1‑99 GATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCT‑GCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATG > 2:4001952/1‑100 GATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCAT > 2:1448893/1‑100 GATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCAT > 2:2311669/1‑100 ATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATG > 1:2968336/1‑100 ATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATG > 1:3435311/1‑100 TGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTCCCCAGCTGATTGAGGTCATGC > 1:1207549/1‑100 TGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGC > 2:3030316/1‑100 GCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCT > 1:2200813/1‑100 GCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTAATGCc > 1:3829261/1‑99 CCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTC > 2:2704092/1‑100 CCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTC > 1:3468588/1‑100 CCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTC > 1:2868642/1‑100 CCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTC > 1:806467/1‑100 CTACCAAGGAGCGCCACAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTG < 1:3030329/100‑1 CAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACta < 2:2034814/100‑3 CAGCGCGAGGAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACta < 2:3771404/100‑3 GAGCTGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGG < 1:3695720/100‑1 GGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGG < 1:4017231/100‑1 GCATCGGCTGTGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGGTGTCCGCGGTGGTGACCAGGCTGTGGGTCAGGC < 2:2758377/100‑1 GCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGC < 2:954949/100‑1 GCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGC < 1:3966036/100‑1 CATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCC > 1:2937226/1‑100 CATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCC < 1:4028591/100‑1 CGAGCATGACCTCAATCAGCTGGGTAATCTGCTTCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGAGCGCCACAGCGCGAGGAGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1428130‑1428029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCC > NC_000913/1428067‑1428165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |