| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4555361 = | 137 (1.130) | 11 (0.100) | 6/158 | NT | 8.7% | intergenic (+12/+129) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein |
| ? | NC_000913 | 4555390 = | 108 (1.000) | intergenic (+41/+100) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TAACATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4555469‑4555361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgcgcttTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTA > NC_000913/4555390‑4555488 TAACATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACC > 1:604081/1‑100 AACATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCC > 2:3205225/1‑100 CATTCAGGTTATACAGATAGCTAAACACTACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACC < 2:394122/97‑1 CATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTT > 2:2461161/1‑100 CATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTT > 2:2065948/1‑100 CATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTT > 2:1389449/1‑100 ATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTG > 2:1232414/1‑100 ATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTG > 2:2876240/1‑100 ATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTG < 1:2770343/100‑1 ATTCAGGTTATACAGATAGCTAAACAAAACCCTGCAATTTACAAAGTAATACTCATTGCTACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTG < 1:750113/100‑1 TTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGC < 2:3028661/100‑1 TTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGC > 2:1870012/1‑100 TTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGC < 1:147814/100‑1 TCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCG < 1:1401755/100‑1 CAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGC > 2:713937/1‑100 CAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAATAAGACTCATTGCGACTTGTTAATTTAAGACAGCGCAAGGAACGTTTACCCTTGCGC > 2:2808407/1‑100 AGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGag > 2:3115837/1‑96 AGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCT < 1:2632945/100‑1 AGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCT > 2:1660793/1‑100 GGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCTT > 2:376664/1‑100 GGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCTT < 2:1224635/100‑1 ATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCT > 1:1030125/1‑100 ATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCT > 2:669586/1‑100 AAGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTAT > 1:2767299/1‑100 AGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATA > 2:471264/1‑100 AGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATA > 1:1534603/1‑100 GAAAGCGCATGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGAAGGGTATTGTTTAGCTATCTGTATAA > 2:2616612/1‑100 GAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAA > 1:856836/1‑100 GAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAA > 1:3189909/1‑100 GAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAA > 1:3176947/1‑100 AAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACC < 1:471266/100‑1 GCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTG > 2:842941/1‑100 CCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGCGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTC > 2:1454903/1‑100 CCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTC > 2:1279763/1‑100 CCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATT > 2:2046047/1‑99 CTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCT > 1:1147738/1‑100 CTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCT > 2:1193108/1‑100 CTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCT > 1:2758352/1‑100 TGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTC < 1:2108665/100‑1 TGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTATT > 1:2399300/1‑99 TGCGCTTTCTTAAATTAAGAACCCGCAAGGAGTATTACTCTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGACTGTTAGTACTCATTCT > 2:1369184/1‑98 TGCGCTTGCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATATGTATAACCTGAATGTTAGTACTCATTCTTC > 2:2232812/1‑100 GCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCC > 1:483099/1‑100 GCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCC < 1:2395710/100‑1 GCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCC < 1:1693328/100‑1 GCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGGTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCC < 2:1786193/100‑1 GCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTG < 2:1886491/100‑1 TTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTACAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGTTA > 2:3213480/1‑100 TAACATTCAGGTTATACAGATAGCTAAACAATACCCTGCAATTTACAAAGTAATACTCATTGCGACTTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4555469‑4555361‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgcgcttTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTA > NC_000913/4555390‑4555488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |