New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	998439 =	160 (1.310)	7 (0.060)	6/180	13.8	4.7%	intergenic (+32/‑51)	elfA/elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
	?	NC_000913	998461 =	136 (1.230)					intergenic (+54/‑29)	elfA/elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/998546‑998439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaggggATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCG  >  NC_000913/998461‑998559                                                                                                                                                                                                                 GAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACAC                                                                                                             >  2:1535002/1‑100  AGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACT                                                                                                            >  2:3066907/1‑100   GTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTG                                                                                                           >  2:2988634/1‑100   GTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTG                                                                                                           >  1:1407625/1‑100   GTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTG                                                                                                           >  2:2963297/1‑100   GTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTG                                                                                                           >  2:2517443/1‑100    TAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGG                                                                                                          >  1:1437535/1‑100    TAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGG                                                                                                          >  2:1232462/1‑100    TAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGG                                                                                                          <  2:1000010/100‑1       TATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGG                                                                                                       <  2:2701733/100‑1       TATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGG                                                                                                       >  1:2200500/1‑100        ATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGG                                                                                                      >  2:1121874/1‑100        ATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGG                                                                                                      >  2:1475269/1‑100         TTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG                                                                                                     <  1:2637533/100‑1         TTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG                                                                                                     <  2:2621911/100‑1                                                          AAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAA                                                    >  2:1184095/1‑100                                                                           AAATATGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAA                                   >  1:787200/1‑100                                                                                TGAATATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTA                              >  1:1922401/1‑100                                                                                     ATCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGC                         <  2:1922408/100‑1                                                                                      TCCCCTCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCA                        >  2:1124007/1‑100                                                                                      TCCCCTCCAGAACACTGGAGGGGATATTCAAATCTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCA                        >  1:2017546/1‑100                                                                                           TCCAGAACACTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATT                   <  2:2017553/100‑1                                                                                                    CTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTG          >  1:775642/1‑100                                                                                                    CTGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTG          >  1:217052/1‑100                                                                                                     TGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGACTTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGC         <  1:1892575/100‑1                                                                                                     TGGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGC         >  1:2406529/1‑100                                                                                                      GGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCT        >  1:1039631/1‑100                                                                                                      GGAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCT        <  2:2605762/100‑1                                                                                                       GAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTC       <  1:389330/100‑1                                                                                                       GAGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTC       >  1:297661/1‑100                                                                                                        AGGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCA      >  2:1237560/1‑100                                                                                                         GGGGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCAT     >  1:380939/1‑100                                                                                                         GGGGATATTCATATTTTTTAAGAGTGACTATCTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTGACGGCAATATTACTCAGCTGCTC       >  1:1058726/1‑98                                                                                                          GGGATATTTATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATC    <  1:1378842/100‑1                                                                                                           GGATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCC   >  2:2348408/1‑100                                                                                                            GATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCG  <  2:2395492/100‑1                                                                                                                                                                                                                 GAGTAATATTGCCGTTAAACTTACGGTCACAATTCCCTTTGTTATGCAAGTTTTCATAAATAGTCACTCTTAAAAAATATGAATATCCCCTCCAGAACACTGGAGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/998546‑998439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggaggggATATTCATATTTTTTAAGAGTGACTATTTATGAAAACTTGCATAACAAAGGGAATTGTGACCGTAAGTTTAACGGCAATATTACTCAGCTGCTCATCCG  >  NC_000913/998461‑998559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.