| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 361886 | NA (NA) | 5 (0.040) | 5/164 | NT | NA | noncoding (4/34 nt) | REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 361916 | NA (NA) | noncoding (34/34 nt) | REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/361790‑361886‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACCGA < NC_000913/361916‑361811 TCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTC > 1:944361/1‑100TCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTC > 1:359190/1‑100TCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTC < 1:161714/100‑1 CCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCG < 1:2386634/100‑1 CCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCG < 1:1386269/100‑1 CGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGG < 2:515209/100‑1 CGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGG < 1:3008191/100‑1 GGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATTTTCAATGCGATCACTCCGTTATGATATGTTGATCGGA > 1:249154/1‑100 GGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGA > 2:533329/1‑100 GGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGA > 2:1026762/1‑100 GGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGA > 1:1259366/1‑100 GTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGAT > 2:2604389/1‑100 GTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGAT < 1:98611/100‑1 TATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATGCGGCGCGAGCGCCT < 1:105906/100‑1 GGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATGCGGCGCGAGCGCCTTATC > 2:1790083/1‑100 GTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTGTGATATGTTGGTCGGATGCGGCGCGAGCGCCTTATCC < 1:1790072/100‑1 TAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATGCGGCGCGAGCGCCTTATCCG < 1:2116582/100‑1 GTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTCGCGCCGCATCCGACTAACATATCATAACGGAGTGATCGCATTGAACATGCC > 1:1513139/1‑99 GTCGGATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATT > 2:2679318/1‑100 CGGATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTA > 1:3256379/1‑100 CGGATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTA < 1:1422499/100‑1 GGATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTAC > 2:918029/1‑100 GATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACC < 1:3270171/100‑1 GATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACC < 1:3149457/100‑1 GATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACC < 2:1470583/100‑1 GATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACC > 2:1995713/1‑100 GATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACC < 1:235529/100‑1 GATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACC < 1:1468678/100‑1 ATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACCG < 2:662037/100‑1 TGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACCGA < 2:1321338/100‑1 TGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACCGA < 1:2659932/100‑1 TGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACCGA > 2:2439653/1‑100 TGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACCGA < 1:2649271/100‑1 TCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGgtcggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/361790‑361886‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGGATGCGGCGCGAGCGCCTTATCCGACCAACATATCATAACGGAGTGATCGCATTGAACATGCCAATGACCGAAAGAATAAGAGCAGGCAAGCTATTTACCGA < NC_000913/361916‑361811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |