New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3539757 =	NA (NA)	12 (0.100)	8/160	NT	NA	noncoding (12/34 nt)	REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	3539792 =	NA (NA)					intergenic (+86/‑371)	yhgF/feoA	putative transcriptional accessory protein/ferrous iron transporter, protein A

TGCCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3539864‑3539757 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTG  >  NC_000913/3539792‑3539889                                                                                                                                                                                                                TGCCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTG                                                                                                            <  2:2445413/100‑1  GCCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGA                                                                                                           <  2:417810/100‑1  GCCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGACACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGA                                                                                                           >  1:2668144/1‑100   CCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAA                                                                                                          >  2:392393/1‑100     GGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACG                                                                                                        <  1:1357317/100‑1     GGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACG                                                                                                        <  1:142827/100‑1     GGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACG                                                                                                        >  1:2150994/1‑100     GGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACG                                                                                                        >  2:3387085/1‑100     GGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACG                                                                                                        <  1:241924/100‑1        ATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTCTGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCT                                                                                                     >  2:3277959/1‑100                                                            CTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCC                                                 >  2:3253425/1‑100                                                                   GTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCA                                          >  2:1606339/1‑100                                                                        GCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAACATCATAATA                                     >  1:614732/1‑100                                                                        GCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA                                     >  1:979282/1‑100                                                                        GCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAAT                                      >  1:620183/1‑99                                                                        GCAAAGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCATAGCAAAACTCATAA                                       >  1:2085894/1‑98                                                                         CAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT                                    >  1:3623447/1‑100                                                                         CAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT                                    >  2:375227/1‑100                                                                          AAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA                                   >  1:2671709/1‑100                                                                           AGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT                                  >  1:3192050/1‑100                                                                             GCGTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT                                 >  2:2280225/1‑99                                                                               GTTCGTTGCCAGATGCGGCGTGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG                              >  2:912577/1‑100                                                                                                    GAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTn         <  2:2738718/100‑2                                                                                                    GAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTA         <  1:723921/100‑1                                                                                                     AACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCTACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAA        <  1:3537760/100‑1                                                                                                      ACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAAC       <  1:1135514/100‑1                                                                                                      ACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAAC       >  1:1531808/1‑100                                                                                                       CGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACA      >  2:2151149/1‑100                                                                                                       CGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACA      <  1:2414892/100‑1                                                                                                         CCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAAC    >  2:2331977/1‑100                                                                                                         CCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAAC    <  1:284462/100‑1                                                                                                         CCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAAC    >  2:3142551/1‑100                                                                                                         CCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAAC    >  2:3688590/1‑100                                                                                                         CCTTGCCTGACAT‑‑AAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTG  >  2:1741155/1‑100                                                                                                          CTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGTCAATATTTATCATTTCATTAACAACT   <  2:2226664/100‑1                                                                                                          CTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACT   <  2:1751514/100‑1                                                                                                           TTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTG  <  2:1836318/100‑1                                                                                                           TTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTG  <  1:2360063/100‑1                                                                                                                                                                                                                TGCCGGAATATATTATGAGTTTGGCTGTGGAATAAAAATGCCGGAGATATTCTCCGGCACTTTTATGTCAGGCAAGGCGTTCGTTGCCAGATGCGGCGTGAACGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3539864‑3539757 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTG  >  NC_000913/3539792‑3539889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.