New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3539757 =NA (NA)12 (0.100) 8/160 NT NA noncoding (12/34 nt) REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3539792 = NA (NA)intergenic (+86/‑371) yhgF/feoA putative transcriptional accessory protein/ferrous iron transporter, protein A

Only 100 of 188 total aligned reads displayed.

GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTGAA  >  NC_000913/3539693‑3539891
                                                                                                   |                                                                                                    
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTg                                                                                                      >  2:1040831/1‑100 (MQ=255)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTg                                                                                                      >  1:2614321/1‑100 (MQ=255)
atattatgagtttggctgtggaataaaaatgccggagatattctccggcacttttatgtcaggcAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTg                                                                                                      >  1:3623447‑M1/65‑100 (MQ=255)
atattatgagtttggctgtggaataaaaatgccggagatattctccggcacttttatgtcaggcAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTg                                                                                                      >  2:375227‑M1/65‑100 (MQ=255)
 tattatgagtttggctgtggaataaaaatgccggagatattctccggcacttttatgtcaggcAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGc                                                                                                     >  1:979282‑M1/64‑100 (MQ=255)
  aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGcc                                                                                                    <  2:3697317/100‑1 (MQ=255)
  aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGcc                                                                                                    <  1:1824431/100‑1 (MQ=255)
  aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGcc                                                                                                    >  1:3630256/1‑100 (MQ=255)
  aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGcc                                                                                                    <  1:325641/100‑1 (MQ=255)
   aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCt                                                                                                   >  2:254306/1‑100 (MQ=255)
   aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCt                                                                                                   <  2:3346726/100‑1 (MQ=255)
    aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTg                                                                                                  <  2:124426/100‑1 (MQ=255)
     aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGa                                                                                                 >  2:1580955/1‑100 (MQ=255)
       aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACa                                                                                               <  2:2139932/100‑1 (MQ=255)
        cGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACAt                                                                                              >  2:1644578/1‑100 (MQ=255)
             ggctgtggaataaaaatgccggagatattctccggcacttttatgtcaggcAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                                                         >  2:3253425‑M1/52‑100 (MQ=255)
             aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCAAGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                                                         >  2:308776/1‑100 (MQ=255)
               cGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg                                                                                       >  1:2335594/1‑100 (MQ=255)
               cGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg                                                                                       <  2:1305100/100‑1 (MQ=255)
               cGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg                                                                                       >  1:1956354/1‑100 (MQ=255)
                     tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCACCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgag                                                                                 <  1:3420134/100‑1 (MQ=255)
                            cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑tct                                                                         >  1:2969851/1‑100 (MQ=255)
                              aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTcc                                                                       >  1:1533793/1‑100 (MQ=255)
                               cGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCg                                                                      <  2:601552/100‑1 (MQ=255)
                               cGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCg                                                                      <  1:608312/100‑1 (MQ=255)
                                 gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGATAT‑TCTCCGGc                                                                    <  2:743058/100‑1 (MQ=255)
                                 gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAATGCCGGAGATAT‑TCTCCGGc                                                                    <  2:1389478/100‑1 (MQ=38)
                                 gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAATGCCGGAG‑ATATTCTCCGGc                                                                    <  2:1331296/100‑1 (MQ=38)
                                 gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAATGCCGGAG‑ATATTCTCCGGc                                                                    <  2:2956742/100‑1 (MQ=38)
                                    cGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCAtt                                                                 <  2:1075219/100‑1 (MQ=255)
                                    cGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCAtt                                                                 <  2:2506972/100‑1 (MQ=255)
                                      aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCAGCATCTGGCAACGAACGCCTTGCCTGACATAAAAATGCCGGAGATAT‑TCTCCGGCActtt                                                               <  1:423636/100‑1 (MQ=37)
                                       aTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCAttttt                                                              >  2:1340680/1‑100 (MQ=255)
                                       aTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCAttttt                                                              >  2:3109225/1‑100 (MQ=255)
                                        tttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTa                                                             <  1:1003019/100‑1 (MQ=255)
                                        atctcACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTa                                                             <  2:1698685/96‑1 (MQ=255)
                                          tGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTAtt                                                           >  2:1144126/1‑100 (MQ=255)
                                           gCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTc                                                          >  2:850787/1‑100 (MQ=255)
                                           gCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATGTTTATTc                                                          >  1:2008896/1‑100 (MQ=255)
                                            cACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTaagat                                                         >  1:1698678/1‑96 (MQ=255)
                                            cACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTcc                                                         >  2:3456337/1‑100 (MQ=255)
                                             tcGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAATGCCGGAG‑ATATTCTCCGGCACTTTTAtgtca                                                        <  2:3263850/99‑5 (MQ=25)
                                             aCGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGGATA‑TCTCCGGCATTTTTATTCca                                                        >  1:3380600/1‑100 (MQ=255)
                                             aCGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCca                                                        >  1:126908/1‑100 (MQ=255)
                                              cGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCcac                                                       <  1:3139958/100‑1 (MQ=255)
                                              cGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCcac                                                       >  2:3070995/1‑100 (MQ=255)
                                              cGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCcac                                                       <  1:227069/100‑1 (MQ=255)
                                              cGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAATGCCGGAGATAT‑TCTCCGGCACTTTTAtgtcag                                                       <  1:2494418/100‑6 (MQ=25)
                                                    cGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCaa                                                 >  1:1321619/1‑100 (MQ=255)
                                                     gTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCaaa                                                >  1:655051/1‑100 (MQ=255)
                                                      tAGGGCAGATATGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGTCTTACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAAc                                               <  1:2937472/100‑1 (MQ=255)
                                                       aGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACt                                              <  1:2413182/100‑1 (MQ=255)
                                                        gggCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTc                                             >  2:1307710/1‑100 (MQ=255)
                                                         gtcaggcaaggcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCa                                            >  2:1606339‑M2/43‑100 (MQ=255)
                                                         ggCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCa                                            <  2:1534584/100‑1 (MQ=255)
                                                          gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCat                                           <  2:570112/100‑1 (MQ=255)
                                                           cAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCata                                          >  2:1655828/1‑100 (MQ=255)
                                                           cAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCat                                           >  1:517211/1‑99 (MQ=255)
                                                           cAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACCCata                                          >  1:813657/1‑100 (MQ=255)
                                                            aGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCataa                                         <  1:1580948/100‑1 (MQ=255)
                                                             gATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCataat                                        <  2:2272373/100‑1 (MQ=255)
                                                              gcaaggcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAACATCataata                                       >  1:614732‑M2/38‑100 (MQ=255)
                                                              gcaaggcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCataat                                        >  1:620183‑M2/38‑99 (MQ=255)
                                                              gcaaagcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCATAGCAAAACTCataa                                         >  1:2085894‑M2/38‑98 (MQ=255)
                                                              aTAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCataata                                       <  2:2099573/100‑1 (MQ=255)
                                                                aaggcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAatata                                     >  1:2671709‑M2/36‑100 (MQ=255)
                                                                 aggcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAatatat                                    >  1:3192050‑M2/35‑100 (MQ=255)
                                                                    CGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTcc                                 <  1:241924‑M1/100‑1 (MQ=255)
                                                                    CGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTcc                                 <  1:142827‑M1/100‑1 (MQ=255)
                                                                     gttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCg                                >  2:912577‑M2/31‑100 (MQ=255)
                                                                      TTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCgg                               >  2:392393‑M1/1‑100 (MQ=255)
                                                                        CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCa                             <  2:2445413‑M1/100‑1 (MQ=255)
                                                                              gcATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATAttt                       <  2:1492718/100‑1 (MQ=255)
                                                                                  ctgccgacgaacgCCTTGCCTGTCATAAAGGTGCCGAAGAATA‑TCTCCGGCACTTTTATTCCACCGCCAACCTCATAATATATTCCGGCAATATTTAtc                    <  1:2821243/93‑1 (MQ=255)
                                                                                  cTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtca                   >  2:2051101/1‑100 (MQ=255)
                                                                                   tGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TATCCGGCATTTTTATTACACAGCCAAACTCATAATATATTCCGGCAATATTTAtcat                  >  2:229038/1‑100 (MQ=255)
                                                                                    ggCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcctt                 >  1:2163107/1‑100 (MQ=255)
                                                                                    ggCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatt                 >  2:2531512/1‑100 (MQ=255)
                                                                                     gCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcattt                >  2:2362630/1‑100 (MQ=255)
                                                                                     gCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcattt                >  2:26904/1‑100 (MQ=255)
                                                                                      cAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttc               <  2:640585/100‑1 (MQ=255)
                                                                                      cAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttc               >  2:3303182/1‑100 (MQ=255)
                                                                                      cAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttc               >  1:632476/1‑100 (MQ=255)
                                                                                        acgaacgCCTTGCCTTACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttcat             <  1:3612358/100‑1 (MQ=255)
                                                                                        acgaacgCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttcat             <  1:1719046/100‑1 (MQ=255)
                                                                                        acgaacgCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttcat             <  1:1750133/100‑1 (MQ=255)
                                                                                        acgaacgCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTACACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttcat             >  2:2222487/1‑100 (MQ=255)
                                                                                         cgaacgCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttcatt            <  1:681706/100‑1 (MQ=255)
                                                                                         cgaacgCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttcatt            <  2:2845277/100‑1 (MQ=255)
                                                                                         cgaacgCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttcatt            >  2:2769286/1‑100 (MQ=255)
                                                                                          gaacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTatcatttcattn           <  2:2738718‑M2/91‑2 (MQ=255)
                                                                                           aacgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCTACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaa          <  1:3537760‑M2/92‑1 (MQ=255)
                                                                                            acgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaac         <  1:1135514‑M2/93‑1 (MQ=255)
                                                                                             cgccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaaca        >  2:2151149‑M2/7‑100 (MQ=255)
                                                                                               ccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaacaac      >  2:3142551‑M2/5‑100 (MQ=255)
                                                                                               ccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaacaac      <  1:284462‑M2/96‑1 (MQ=255)
                                                                                               ccttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaacaac      >  2:2331977‑M2/5‑100 (MQ=255)
                                                                                               ccttGCCTGACAT‑‑AAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTg    >  2:1741155‑M2/5‑100 (MQ=255)
                                                                                                 ttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTg    <  1:2360063‑M2/98‑1 (MQ=255)
                                                                                                 ttGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTg    <  2:1836318‑M2/98‑1 (MQ=255)
                                                                                                   |                                                                                                    
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA‑TCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAACTGAA  >  NC_000913/3539693‑3539891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.