| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3680367 = | NA (NA) | 6 (0.050) | 5/162 | NT | NA | noncoding (1/76 nt) | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3680397 = | NA (NA) | noncoding (31/76 nt) | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3680473‑3680367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC > NC_000913/3680397‑3680494 GAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTT > 2:2862023/1‑100 AAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTA < 1:3386916/100‑1 AGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTAT > 2:657418/1‑100 GTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATTGATGAGCTGGATAGAGGGGTAACACTTTA < 2:1190918/98‑1 GTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATC < 2:3104963/100‑1 GTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATC < 2:1826749/100‑1 GTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATC > 2:1431619/1‑100 GTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATC < 2:328455/100‑1 TGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCC < 2:3043257/100‑1 TGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCC < 1:2150194/100‑1 GACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCA < 1:117754/100‑1 GACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCA < 2:2095299/100‑1 GACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCA < 1:3609427/100‑1 ACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAG > 1:3456032/1‑100 CGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC < 2:136567/100‑1 CGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC > 2:1572366/1‑100 CGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCA > 2:2404102/1‑98 GGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTCCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAA > 1:2029291/1‑100 GATGAGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAAT > 2:2402464/1‑100 GAGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATC > 1:20522/1‑100 AGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCC > 1:174888/1‑100 AGCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCC > 1:2835216/1‑100 GCTGGATAGAGGGGTAACACTTTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCG > 2:527943/1‑100 ATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCC > 2:3187739/1‑100 CCAGCTCATCGATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCG < 2:3167065/99‑1 CCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCG > 1:1216781/1‑99 CAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTG > 1:2117130/1‑100 AGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGG < 2:270975/100‑1 AGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGG > 2:2147159/1‑100 AGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGG > 2:1639297/1‑100 AGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGG < 1:3275806/100‑1 AGCGCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCACCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGG < 2:2398895/100‑1 GCTCATCCATAAATACCTGATGGTTGTGCTAATTCAGCACCATCAGGCATTACTGTGCGGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC < 1:554744/100‑1 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC < 2:2150514/100‑1 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC < 2:3391350/100‑1 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC < 2:67725/100‑1 GCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC < 2:759932/100‑1 GAAGTGACGGATATTCCACCTGCACAGTAATGCCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3680473‑3680367‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGC > NC_000913/3680397‑3680494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |