New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3680367 =NA (NA)6 (0.050) 5/162 NT NA noncoding (1/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3680397 = NA (NA)noncoding (31/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 205 total aligned reads displayed.

CGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCG  >  NC_000913/3680269‑3680466
                                                                                                  |                                                                                                   
gccacggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGc                                                                                                    <  2:67725‑M1/2‑1 (MQ=255)
gccacggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGc                                                                                                    <  2:2150514‑M1/2‑1 (MQ=255)
cgAAACGTGGGCAGCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGc                                                                                                    >  2:651936/1‑100 (MQ=255)
cgAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGc                                                                                                    >  2:3427497/1‑100 (MQ=255)
 ccacggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctggtggtgatgagttagcacaaccatcaggtatttatggatgcGCt                                                                                                   <  2:2398895‑M1/3‑1 (MQ=255)
 ccacggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCt                                                                                                   <  1:3275806‑M1/3‑1 (MQ=255)
 ccacggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCt                                                                                                   >  2:1639297‑M1/98‑100 (MQ=255)
 ccacggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCt                                                                                                   <  2:270975‑M1/3‑1 (MQ=255)
  aaaCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTg                                                                                                  >  2:2758650/1‑100 (MQ=255)
  aaaCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTg                                                                                                  <  1:2729525/100‑1 (MQ=255)
   aaCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTgg                                                                                                 <  1:2642894/100‑1 (MQ=255)
   aaCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTgg                                                                                                 >  2:3555556/1‑100 (MQ=255)
    cggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTgg                                                                                                 >  1:1216781‑M1/95‑99 (MQ=255)
    aCGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGa                                                                                                <  1:1585834/100‑1 (MQ=255)
     ggatgacgtacatcctgaagtgacggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGAt                                                                                               >  2:3187739‑M1/94‑100 (MQ=255)
         ggCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAg                                                                                           <  1:1712290/100‑1 (MQ=255)
          gCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCACAAGGCTGGATAAAgt                                                                                          >  2:3678998/1‑100 (MQ=255)
          gCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAgt                                                                                          >  2:3518962/1‑100 (MQ=255)
          gCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAgt                                                                                          <  1:2690327/100‑1 (MQ=255)
          gCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAgt                                                                                          <  1:3695546/100‑1 (MQ=255)
               tGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTAc                                                                                     <  1:405820/100‑1 (MQ=255)
                  ccGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTAcccn                                                                                  <  1:582660/100‑2 (MQ=255)
                  ccGCAAGTACCGTTATTCAGTAGCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTAccac                                                                                  <  2:2553010/100‑3 (MQ=255)
                    gCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCctc                                                                                <  1:397605/100‑1 (MQ=255)
                    gCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCctc                                                                                <  1:1889163/100‑1 (MQ=255)
                    gCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCctc                                                                                >  1:2856285/1‑100 (MQ=255)
                    gCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCctc                                                                                >  2:1296065/1‑100 (MQ=255)
                         tACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATcc                                                                           <  2:2322512/100‑1 (MQ=255)
                         tACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATcc                                                                           <  2:1948254/100‑1 (MQ=255)
                         tACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATcc                                                                           <  1:3393370/100‑1 (MQ=255)
                           cctttATTCAGTATCGCGGCGGAACTATTCCGCGTGTGGCGATGCTAGCTTAGACGCAGCATATGCATAAGTCTGGATAGGGTGTTACCCCTCTATcc                                                                           <  1:3508070/95‑1 (MQ=255)
                            cggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        >  2:527943‑M1/71‑100 (MQ=255)
                            cGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAgn                                                                        <  2:3006234/100‑2 (MQ=255)
                            cGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        <  1:1006378/100‑1 (MQ=255)
                            cGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGc                                                                        >  2:2589857/1‑100 (MQ=255)
                             ggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAGCt                                                                       >  1:2835216‑M1/70‑100 (MQ=255)
                             ggatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAGCt                                                                       >  1:174888‑M1/70‑100 (MQ=255)
                             gTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCt                                                                       <  1:3620192/100‑1 (MQ=255)
                             gTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCt                                                                       <  2:3635520/100‑1 (MQ=255)
                             gTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCt                                                                       <  2:1256741/100‑1 (MQ=255)
                              ttATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTc                                                                      <  1:2592451/100‑1 (MQ=255)
                              gatattccacctgcacagtaatgcctgatggtgatgagttagcacaaccatcaggtatttatggatgaGCTGGATAAAGTGTTACCCCTCTATCCAGCTc                                                                      >  1:20522‑M1/69‑100 (MQ=255)
                                aTTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCAt                                                                    <  2:1553477/100‑1 (MQ=255)
                                   cAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCa                                                                 <  2:3244025/100‑1 (MQ=255)
                                    aGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCAt                                                                >  2:3464418/1‑100 (MQ=255)
                                    aGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCAt                                                                <  2:5737/100‑1 (MQ=255)
                                     gTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATa                                                               <  1:1090460/100‑1 (MQ=255)
                                       aTCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATaaa                                                             >  1:892030/1‑100 (MQ=255)
                                         cgcgGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATa                                                           >  2:337310/1‑100 (MQ=255)
                                         cgcgGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATa                                                           <  2:862077/100‑1 (MQ=255)
                                          gcggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAc                                                          >  1:625752‑M1/1‑99 (MQ=255)
                                           cggcgCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcc                                                         <  1:2146690‑M1/100‑3 (MQ=255)
                                              cgcgAGTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATCAAGTGTTACCCCTCTATCCAGCTCATCCATAGATAcctg                                                       >  1:1172129‑M1/1‑95 (MQ=255)
                                                 gATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatgg                                                   <  2:3345673‑M1/100‑9 (MQ=255)
                                                  aTTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggt                                                  >  1:1066535‑M1/1‑91 (MQ=255)
                                                  aTTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggt                                                  <  2:3231088‑M1/100‑10 (MQ=255)
                                                    tATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtg                                                >  1:2111999/1‑100 (MQ=255)
                                                     aTCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtgt                                               <  1:471672/100‑1 (MQ=255)
                                                       cccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtgtg                                              <  1:3207435/99‑1 (MQ=255)
                                                       cccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGc                                             >  1:1955638/1‑100 (MQ=255)
                                                        ccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCt                                            >  2:172107/1‑100 (MQ=255)
                                                        ccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCt                                            >  2:2880331/1‑100 (MQ=255)
                                                         cgcgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTa                                           <  2:2774357/100‑1 (MQ=255)
                                                         cgcgGGAGGCGATGCCCGCGTAAACGCAGCATATGCTAAAGGCTGGATAAAGTGTTACGCCTCTATCCAGCTCATCCATGAATACCTGATGGTTGTGCt                                            <  1:1147404/99‑1 (MQ=255)
                                                          gcgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTaa                                          >  2:290568/1‑100 (MQ=255)
                                                           cgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAAc                                         <  2:2126065/100‑1 (MQ=255)
                                                            gTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACt                                        <  2:2865101/100‑1 (MQ=255)
                                                               aGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcat                                     >  2:124871/1‑100 (MQ=255)
                                                               aGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcat                                     <  1:2428220/100‑1 (MQ=255)
                                                                ggCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcatc                                    >  2:1448339/1‑100 (MQ=255)
                                                                ggCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcatc                                    <  1:2801786/100‑1 (MQ=255)
                                                                       ccAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCA                             <  2:3607812‑M2/100‑1 (MQ=255)
                                                                        cAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAG                            <  1:1630084‑M2/100‑1 (MQ=255)
                                                                         aGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttagcacaaccatcagg                           <  2:1877396‑M1/100‑33 (MQ=255)
                                                                          gCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttagcacaaccatcaggt                          <  2:1071948‑M1/100‑34 (MQ=255)
                                                                          gCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGc                          <  2:2481229/100‑1 (MQ=255)
                                                                          gCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGc                          <  1:980221/100‑1 (MQ=255)
                                                                           cGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCa                         <  2:2821064/100‑1 (MQ=255)
                                                                            gTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCAt                        <  1:1296059/100‑1 (MQ=255)
                                                                            gTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCATCTATCCAGTTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCAt                        <  1:512141/100‑1 (MQ=255)
                                                                             tAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggtgatgagttagcacaaccatcaggtatt                       <  1:1258537‑M1/100‑37 (MQ=255)
                                                                             tAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCAtt                       >  2:2077240/1‑100 (MQ=255)
                                                                                aCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACt                    >  2:2645700/1‑100 (MQ=255)
                                                                                  gcagcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCCAACTCATCACCATCAGGCATTACtgt                  <  2:2269370/100‑1 (MQ=255)
                                                                                   cagcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACtgtg                 >  2:563435/1‑100 (MQ=255)
                                                                                    agcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGc                <  1:1568712/100‑1 (MQ=255)
                                                                                    agcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGc                <  1:1437769/100‑1 (MQ=255)
                                                                                    agcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGc                <  2:2724874/100‑1 (MQ=255)
                                                                                     gcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCa               <  2:1338353/100‑1 (MQ=255)
                                                                                       atatGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAgg             <  2:2206353/100‑1 (MQ=255)
                                                                                        tatGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGt            >  2:3115748/1‑100 (MQ=255)
                                                                                         atGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTg           >  1:3263651/1‑100 (MQ=255)
                                                                                         atGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTg           <  2:759498/100‑1 (MQ=255)
                                                                                          tgccacgggCTGGATAAAGTGTTACCCCTCTACCCAGCTCATCCATAAATCCCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACGGTGCAGGTg           <  1:1373417/92‑1 (MQ=255)
                                                                                          tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg          <  1:2880312/100‑1 (MQ=255)
                                                                                          tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg          >  1:838769/1‑100 (MQ=255)
                                                                                          tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg          >  2:76345/1‑100 (MQ=255)
                                                                                          tGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg          <  1:3333952/100‑1 (MQ=255)
                                                                                           gCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCCTTACTGTGCAGGTGGa         >  1:3537691/1‑100 (MQ=255)
                                                                                            cAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGaa        <  1:2270331/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
CGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCG  >  NC_000913/3680269‑3680466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.