New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4484333 =	NA (NA)	6 (0.050)	6/164	NT	NA	noncoding (1/84 nt)	REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	4484365 =	NA (NA)					noncoding (33/84 nt)	REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP342 (repetitive extragenic palindromic) element; contains 2 REP sequences

TGCGTCAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4484438‑4484333 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGC  >  NC_000913/4484365‑4484463                                                                                                                                                                                                               TGCGTCAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCA                                                                                                           <  2:3679343/100‑1  GCGTCAGGCAAGTCTGTTATTGCCGGATGCGGCGTTAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCAT                                                                                                          <  2:688979/100‑1  GCGTCAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCAT                                                                                                          <  2:3344203/100‑1   CGTCAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATC                                                                                                         >  1:2901409/1‑100    GTCAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCA                                                                                                        >  2:2716801/1‑100    GTCAGGAAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTAGCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACGGCGTCGCATCA                                                                                                        <  1:944882/100‑1     TCAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAG                                                                                                       <  1:3533061/100‑1      CAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGG                                                                                                      <  2:2780851/100‑1      CAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGG                                                                                                      >  1:1751512/1‑100      CAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGG                                                                                                      >  2:1555454/1‑100      CAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGG                                                                                                      <  1:2098782/100‑1      CAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGG                                                                                                      >  1:2828973/1‑100       AGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGC                                                                                                     <  2:2908095/100‑1                                                  GACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCTGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCC                                                          <  1:2065931/100‑1                                                                   ACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAG                                         >  2:1100328/1‑100                                                                        TAGGCCTGATAAGACACAACAGCGTCGCATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTG                                    >  2:2932379/1‑100                                                                          GGCCTGATAAGACACAACAGCGTCGCATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCC                                  >  1:2370731/1‑100                                                                           GCCTGATAAGACACAACAGCGTCGCATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCT                                 >  1:1748926/1‑100                                                                             CTGATAAGACACAACAGCGTCGCATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGA                               >  1:58673/1‑100                                                                                                    ATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAA        >  2:3682447/1‑100                                                                                                    ATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAA        >  2:1261013/1‑100                                                                                                     nCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGTCTTGCCTGACGCAATTACTCTTCGCCGTTAAAC       >  1:2715494/2‑100                                                                                                     TCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAAC       <  2:2318806/100‑1                                                                                                      CAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCCATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAAgc      <  2:2522365/100‑3                                                                                                      CAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACC      <  2:1045056/100‑1                                                                                                      CAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACC      >  1:1948515/1‑100                                                                                                       AGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCC     <  1:3495059/100‑1                                                                                                       AGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCC     <  2:863032/100‑1                                                                                                       AGGCCTACGAGTTCAGTGCTGTGGAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTGCGCCGTTAAACCC     <  1:90625/100‑1                                                                                                        GGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCA    >  2:1248190/1‑100                                                                                                        GGCCTACGAGTTCAGTGCTGTGTAAGTCCGATAAGTCGTGCACGCCGCATCCGGCAATTGCAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAAC       <  1:3309874/97‑1                                                                                                         GCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAG   <  1:1426185/100‑1                                                                                                          CCTACGAGTTCAGTGCTGTGTAGGTCTGATAGGTCGCTGACGCCGCAACCGGAAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAG   >  1:1491389/1‑99                                                                                                          CCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGC  >  1:69840/1‑100                                                                                                          CCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGC  >  1:2117782/1‑100                                                                                                                                                                                                               TGCGTCAGGCAAGGCTGTTATTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACACAACAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4484438‑4484333 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAATAACAGCCTTGCCTGACGCAATTACTCTTCGCCGTTAAACCCAGC  >  NC_000913/4484365‑4484463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.