New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	437120 =	NA (NA)	12 (0.100)	10/162	NT	NA	noncoding (1/37 nt)	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	437153 =	NA (NA)					noncoding (34/37 nt)	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences

AAGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/437226‑437120 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaggcCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAAT  >  NC_000913/437153‑437251                                                                                                                                                                                                                AAGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCAC                                                                                                            <  1:1940801/100‑1  AGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACA                                                                                                           <  2:2059657/100‑1  AGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACA                                                                                                           >  1:62025/1‑100   GCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACAT                                                                                                          >  2:1432327/1‑100    CCGGAACAGATTGCCTAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATC                                                                                                         <  1:2889554/100‑1    CCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATC                                                                                                         >  2:2346666/1‑100     CGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCA                                                                                                        <  1:1730724/100‑1     CGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCA                                                                                                        <  2:451361/100‑1      GGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAG                                                                                                       <  1:1417393/100‑1      GGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAG                                                                                                       >  2:3448183/1‑100      GGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAG                                                                                                       >  1:1891828/1‑100       GAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                                                      <  2:2869062/100‑1       GAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                                                      >  1:649975/1‑100       GAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGG                                                                                                      >  2:140919/1‑100                                                        GATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATACTACGACAGGATGCGGCTTATACGGCGTT                                                     >  1:131904/1‑100                                                          TTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTC                                                   >  2:2744371/1‑100                                                           TTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCC                                                  <  1:2744352/100‑1                                                                     GTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAA                                        >  1:2428605/1‑100                                                                         AGGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTG                                    >  2:2319183/1‑100                                                                          GGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGT                                   >  2:2958309/1‑100                                                                          GGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGT                                   >  2:891148/1‑100                                                                          GGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGT                                   >  2:948704/1‑100                                                                           GCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTT                                  >  1:2209556/1‑100                                                                            CCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGAGTTTCCAGTTCGGCAATCTGTTC                                 >  1:2787913/1‑100                                                                             CTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCC                                >  2:3375712/1‑100                                                                              TGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCG                               >  2:3198963/1‑100                                                                                                    CATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGC         >  1:941604/1‑100                                                                                                    CATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGC         <  2:2845481/100‑1                                                                                                     ATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCG        >  2:1162123/1‑100                                                                                                     ATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCG        <  1:2318298/100‑1                                                                                                        AGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTC     <  1:2869043/100‑1                                                                                                         GGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCA    <  2:1417398/100‑1                                                                                                         GGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCA    >  1:3587344/1‑100                                                                                                          GCCTGGAGTCTAATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAA   >  1:1954452/1‑100                                                                                                          GCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAA   >  2:2458644/1‑100                                                                                                           CCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAAT  >  2:2876656/1‑100                                                                                                           CCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAAT  <  1:219687/100‑1                                                                                                                                                                                                                AAGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/437226‑437120 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaggcCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAAT  >  NC_000913/437153‑437251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.