New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4323250 =	NA (NA)	6 (0.060)	5/164	NT	NA	noncoding (5/87 nt)	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	4323280 =	NA (NA)					noncoding (35/87 nt)	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences

GAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4323354‑4323250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCG  >  NC_000913/4323280‑4323378                                                                                                                                                                                                              GAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTAT                                                                                                          >  2:2267927/1‑100  AGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATC                                                                                                         >  1:2213676/1‑100   GTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCC                                                                                                        >  1:270261/1‑100    TAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCG                                                                                                       <  2:2290992/100‑1    TAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCG                                                                                                       >  2:1747170/1‑100    TAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCG                                                                                                       >  2:814084/1‑100     AAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGAGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGG                                                                                                      <  2:1694598/100‑1      AAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC                                                                                                     >  1:2455021/1‑100                                                                       TTGATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAC                                    >  1:1916801/1‑100                                                                         GATGCCGAATGAGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCG                                  >  2:1628159/1‑100                                                                          ATGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAAGGCCTGCACATTGTCGGATGCGACGCCGGGGAGTCTTATCCGACCTACGATTTACTGCACCG                                  >  2:2586825/1‑99                                                                            GCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTT                               >  1:615643/1‑100                                                                             CCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTT                              >  2:1107344/1‑100                                                                             CCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTT                              >  1:387847/1‑100                                                                                                    TCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTA       <  1:1570678/100‑1                                                                                                     CCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAG      >  1:3019369/1‑100                                                                                                      CGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGC     >  1:1261440/1‑100                                                                                                       GGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGTCCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTT        <  2:1240196/96‑1                                                                                                        GCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGC   <  2:1678446/100‑1                                                                                                         CATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCG  >  2:985743/1‑100                                                                                                                                                                                                              GAGTAAAGCGGTGCAGTAAATCGTAGGTCGGATAAGACGCCCCGGCGTCGCATCCGACAATGTGCAGGCGTTGATGCCGGATGCGGTGCAAGCACCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4323354‑4323250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCG  >  NC_000913/4323280‑4323378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.