New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4323250 =NA (NA)6 (0.060) 5/164 NT NA noncoding (5/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4323280 = NA (NA)noncoding (35/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 158 total aligned reads displayed.

ACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTT  >  NC_000913/4323151‑4323349
                                                                                                   |                                                                                                   
cgcgctaagcgcgatgagttcggtgagtaaagcggtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatg                                                                                                     >  2:985743‑M1/100‑100 (MQ=255)
acCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGCGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAgg                                                                                                     >  2:104904/1‑100 (MQ=255)
acCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAgg                                                                                                     >  2:2945821/1‑100 (MQ=255)
acCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAgg                                                                                                     >  1:2874988/1‑100 (MQ=255)
 ccAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGc                                                                                                    >  1:1747185/1‑100 (MQ=255)
   aaCACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCg                                                                                                  >  2:1083566/1‑100 (MQ=255)
   aaCACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCg                                                                                                  >  1:523517/1‑100 (MQ=255)
    acacGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCgg                                                                                                 <  1:359715/100‑1 (MQ=255)
    acacGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCgg                                                                                                 <  2:2282575/100‑1 (MQ=255)
        ggCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATaa                                                                                             >  2:334413/1‑100 (MQ=255)
            aGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTg                                                                                         <  1:2609063/100‑1 (MQ=255)
            aGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTg                                                                                         <  2:902999/100‑1 (MQ=255)
             gTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATTGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGc                                                                                        <  1:2668028/100‑1 (MQ=255)
             gTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGc                                                                                        <  2:2874959/100‑1 (MQ=255)
              tACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCt                                                                                       <  1:1007474/100‑1 (MQ=255)
                cAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTg                                                                                     <  1:2408975/100‑1 (MQ=255)
                   cGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCAc                                                                                  >  2:2869365/1‑100 (MQ=255)
                   cGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCAc                                                                                  <  1:503535/100‑1 (MQ=255)
                    ggCCCAGCTCAGAAGCGAGAACCGGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCAcc                                                                                 <  2:864112/100‑1 (MQ=255)
                    ggCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCAcc                                                                                 >  2:618906/1‑100 (MQ=255)
                    ggCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCAcc                                                                                 <  1:419568/100‑1 (MQ=255)
                    ggCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCAcc                                                                                 <  1:1514269/100‑1 (MQ=255)
                    ggCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCAcc                                                                                 >  1:2512631/1‑100 (MQ=255)
                      cccAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCg                                                                                <  2:292169/99‑1 (MQ=255)
                           cTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCg                                                                          <  1:1051258/100‑1 (MQ=255)
                           cTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCg                                                                          <  1:1776730/100‑1 (MQ=255)
                            tCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCgg                                                                         <  2:1483485/100‑1 (MQ=255)
                            aaagcggtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCGCATCCgg                                                                         >  2:1107344‑M1/72‑100 (MQ=255)
                            aaagcggtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCGCATCCgg                                                                         >  1:387847‑M1/72‑100 (MQ=255)
                             cAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGc                                                                        >  2:2032602/1‑100 (MQ=255)
                             cAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGc                                                                        <  1:2678931/100‑1 (MQ=255)
                             cAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGc                                                                        >  2:125479/1‑100 (MQ=255)
                              aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                       <  2:577875/100‑1 (MQ=255)
                              aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                       <  2:2763215/100‑1 (MQ=255)
                              aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                       >  2:466338/1‑100 (MQ=255)
                              aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                       >  2:1822509/1‑100 (MQ=255)
                              aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTCGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                       <  2:1728707/100‑1 (MQ=255)
                               gAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                       >  1:243456/1‑99 (MQ=255)
                               gAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                      <  1:230793/100‑1 (MQ=255)
                               gAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                      >  2:2355774/1‑100 (MQ=255)
                               gAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGCCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                      >  2:1691810/1‑100 (MQ=255)
                                cggtgcagtaaatcgtaggtcggataagactccccggcgtcgcatccgacaatgtgcaggccttgatGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                      >  2:2586825‑M1/68‑99 (MQ=255)
                                cggtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCTCATTCGGCATc                                                                     >  2:1628159‑M1/68‑100 (MQ=255)
                                 aGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATGCGGTGCAAGCACCTTATCCGGcctac                                                                    <  1:560073/100‑5 (MQ=25)
                                  gtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCGCATCCGGCATCaa                                                                   >  1:1916801‑M1/66‑100 (MQ=255)
                                   cGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAAc                                                                  <  2:2254006/100‑1 (MQ=255)
                                    gagaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACg                                                                 >  2:1622640/1‑100 (MQ=255)
                                      gaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGcc                                                               >  1:745829/1‑100 (MQ=255)
                                      gaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGcc                                                               <  1:2201360/100‑1 (MQ=255)
                                          cAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGca                                                           <  1:935738/100‑1 (MQ=255)
                                           aGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGcac                                                          >  2:461632/1‑100 (MQ=255)
                                             cTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACAt                                                        <  2:2808999/100‑1 (MQ=255)
                                                 gcTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTc                                                    >  2:37885/1‑100 (MQ=255)
                                                  cTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCg                                                   <  1:2686564/100‑1 (MQ=255)
                                                  cTTGGGTGGGGCGATGGTGATGGTTTGCAGGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCg                                                   <  1:126152/100‑1 (MQ=255)
                                                   ttGGGTGGGGCGGTGGTGATGGTTCGCATGTTTGGCTGCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCTTGCACATTGTCgg                                                  <  2:1922396/100‑1 (MQ=38)
                                                    tgggtgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGa                                                 >  1:2153295/1‑100 (MQ=255)
                                                    tgggtgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGa                                                 >  1:1060747/1‑100 (MQ=255)
                                                        tgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCg                                             <  2:2197599/100‑1 (MQ=255)
                                                        tgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCg                                             >  2:150542/1‑100 (MQ=255)
                                                        tgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCg                                             >  1:2244371/1‑100 (MQ=255)
                                                         ggggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGa                                            >  1:73040/1‑100 (MQ=255)
                                                          gggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGAc                                           >  2:3007720/1‑100 (MQ=255)
                                                          gggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGAc                                           <  2:670024/100‑1 (MQ=255)
                                                           ggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACg                                          >  1:619739/1‑100 (MQ=255)
                                                            gCGATGGTGATGGTTTGCATGTTTGGCTACGGTCTGTAGGCAGGATAAGGTGCTTGCACCGCATCCGGCAGCAACGCCTGAACATTGTCGGATGCGACg                                          >  2:1152940/1‑99 (MQ=255)
                                                              gatggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCg                                       <  1:2713434/100‑1 (MQ=255)
                                                                 ggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCgggg                                    <  1:1174683/100‑1 (MQ=255)
                                                                  gtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGc                                   <  1:2539332/100‑1 (MQ=255)
                                                                  gtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGc                                   >  2:1570665/1‑100 (MQ=255)
                                                                      tggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTc                                <  2:1151584/99‑1 (MQ=255)
                                                                      tggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTc                                <  2:243454/99‑1 (MQ=255)
                                                                      tggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCt                               <  1:1694996/100‑1 (MQ=255)
                                                                      cttccgatctGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCt                               <  1:1401991/91‑1 (MQ=255)
                                                                       ggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCCCGGCGTcgc                              <  1:483331/100‑3 (MQ=255)
                                                                          ttGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATc                           <  2:2153276/100‑1 (MQ=255)
                                                                           tGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATcc                          <  1:326158/100‑1 (MQ=255)
                                                                            gCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTcagatcgg                         >  2:2462017/1‑93 (MQ=255)
                                                                            gCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCg                         >  1:2951249/1‑100 (MQ=255)
                                                                              aTGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGAc                       <  2:745827/100‑1 (MQ=255)
                                                                               tGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGAcc                      <  1:668713/100‑1 (MQ=255)
                                                                               tGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGAcc                      >  1:941950/1‑100 (MQ=255)
                                                                                gTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCtagatcggaag                     >  2:1401981/1‑90 (MQ=255)
                                                                                gTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCt                     <  1:1679515/100‑1 (MQ=255)
                                                                                  ttGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATAAGACGCCCCGGCGTCGCATCCGAcaatg                   <  1:2995391/100‑5 (MQ=21)
                                                                                   tGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACg                  <  1:2355796/100‑1 (MQ=255)
                                                                                    ggCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGa                 >  2:172854/1‑100 (MQ=255)
                                                                                     gCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGAt                <  1:618907/100‑1 (MQ=255)
                                                                                     gCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGAt                <  1:1342673/100‑1 (MQ=255)
                                                                                       tCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGAttt              <  2:2157021/100‑1 (MQ=255)
                                                                                        ccGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACGTACGAttt              >  1:1488856/1‑99 (MQ=255)
                                                                                         cGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTAc            <  2:1601588/100‑1 (MQ=255)
                                                                                          ggTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTAc            <  2:764025/99‑1 (MQ=255)
                                                                                          ggTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATAAGACGCCCCGGCGTCGCATCCGAcaatgtgca               <  2:1839084/96‑9 (MQ=21)
                                                                                             cTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCa        <  2:2374009/100‑1 (MQ=255)
                                                                                                tAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCAACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAc       <  2:2017525/98‑1 (MQ=255)
                                                                                                 aGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGc    >  1:2141805/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCt   >  2:1278951/1‑100 (MQ=255)
                                                                                                  ggCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCt   >  1:55706/1‑100 (MQ=255)
                                                                                                   GCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCtt  >  1:2455021‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
ACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTT  >  NC_000913/4323151‑4323349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.