New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4323250 =NA (NA)6 (0.060) 5/164 NT NA noncoding (5/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4323280 = NA (NA)noncoding (35/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 137 total aligned reads displayed.

AGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGT  >  NC_000913/4323181‑4323379
                                                                                                   |                                                                                                   
aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                                                     <  2:577875/100‑1 (MQ=255)
aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                                                     >  2:466338/1‑100 (MQ=255)
aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                                                     <  2:2763215/100‑1 (MQ=255)
aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                                                     <  2:2977925/100‑1 (MQ=255)
aGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTCGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                                                     <  2:1728707/100‑1 (MQ=255)
 gacgCGAGAACCAGCTGCGCTTGGGTGGGGCAATGGTGATGGTTTGCATGTTTGCCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                                                     <  2:2170549/96‑1 (MQ=255)
 gAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCa                                                                                                     >  1:243456/1‑99 (MQ=255)
 gAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                                                    >  1:537205/1‑100 (MQ=255)
 gAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                                                    >  2:2355774/1‑100 (MQ=255)
 gAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGCCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                                                    >  2:1691810/1‑100 (MQ=255)
  cggtgcagtaaatcgtaggtcggataagactccccggcgtcgcatccgacaatgtgcaggccttgatGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                                                    >  2:2586825‑M1/68‑99 (MQ=255)
  cggtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCTCATTCGGCATc                                                                                                   >  2:1628159‑M1/68‑100 (MQ=255)
  aaGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATc                                                                                                   <  1:2679700/100‑1 (MQ=255)
   aGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCa                                                                                                  >  1:1966475/1‑100 (MQ=255)
    gtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCGCATCCGGCATCaa                                                                                                 >  1:1916801‑M1/66‑100 (MQ=255)
     cGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAAc                                                                                                <  1:1393156/100‑1 (MQ=255)
      gagaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACg                                                                                               <  2:2257705/100‑1 (MQ=255)
       agaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGc                                                                                              >  1:72656/1‑100 (MQ=255)
        gaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGcc                                                                                             <  1:2201360/100‑1 (MQ=255)
        gaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGcc                                                                                             >  1:745829/1‑100 (MQ=255)
        gaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGcc                                                                                             >  1:954110/1‑100 (MQ=255)
          aCCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTg                                                                                           <  2:954106/100‑1 (MQ=255)
            cAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGca                                                                                         >  2:1617732/1‑100 (MQ=255)
            cAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGca                                                                                         <  1:935738/100‑1 (MQ=255)
             aGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGcac                                                                                        >  2:461632/1‑100 (MQ=255)
               cTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACAt                                                                                      <  2:2808999/100‑1 (MQ=255)
                   gcTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTc                                                                                  >  1:2980025/1‑100 (MQ=255)
                    cTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCg                                                                                 >  1:365785/1‑100 (MQ=255)
                     ttGGGTGGGGCGGTGGTGATGGTTCGCATGTTTGGCTGCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCTTGCACATTGTCgg                                                                                <  2:1922396/100‑1 (MQ=38)
                      tgggtgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGa                                                                               >  1:2153295/1‑100 (MQ=255)
                      tgggtgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGa                                                                               >  1:1060747/1‑100 (MQ=255)
                        ggtgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATg                                                                             >  2:2287930/1‑100 (MQ=255)
                          tgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCg                                                                           >  1:2244371/1‑100 (MQ=255)
                          tgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCg                                                                           >  1:486158/1‑100 (MQ=255)
                          tgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCg                                                                           <  2:2197599/100‑1 (MQ=255)
                            gggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGAc                                                                         >  2:3007720/1‑100 (MQ=255)
                            gggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGAc                                                                         <  2:670024/100‑1 (MQ=255)
                              gCGATGGTGATGGTTTGCATGTTTGGCTACGGTCTGTAGGCAGGATAAGGTGCTTGCACCGCATCCGGCAGCAACGCCTGAACATTGTCGGATGCGACg                                                                        >  2:1152940/1‑99 (MQ=255)
                                gatggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCg                                                                     <  1:2713434/100‑1 (MQ=255)
                                   ggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCgggg                                                                  <  1:1174683/100‑1 (MQ=255)
                                    gtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGc                                                                 <  1:2539332/100‑1 (MQ=255)
                                    gtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGc                                                                 >  2:1570665/1‑100 (MQ=255)
                                     tgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCg                                                                >  2:1751671/1‑100 (MQ=255)
                                      gatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGt                                                               <  2:3090930/100‑1 (MQ=255)
                                       atggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTc                                                              <  2:2105024/100‑1 (MQ=255)
                                        tggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTc                                                              <  2:1151584/99‑1 (MQ=255)
                                        cttccgatctGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCt                                                             <  1:1401991/91‑1 (MQ=255)
                                         ggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCCCGGCGTcgc                                                            <  1:483331/100‑3 (MQ=255)
                                          gtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTa                                                           >  1:2421386/1‑100 (MQ=255)
                                            ttGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATc                                                         <  2:2153276/100‑1 (MQ=255)
                                             tGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATcc                                                        <  1:326158/100‑1 (MQ=255)
                                             tGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATcc                                                        >  2:1342664/1‑100 (MQ=255)
                                             tGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATcc                                                        <  1:2584207/100‑1 (MQ=255)
                                              gCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTcagatcgg                                                       >  2:2462017/1‑93 (MQ=255)
                                                 tGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGAcc                                                    <  1:668713/100‑1 (MQ=255)
                                                  gTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCtagatcggaag                                                   >  2:1401981/1‑90 (MQ=255)
                                                  gTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCt                                                   <  1:1679515/100‑1 (MQ=255)
                                                  gTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCt                                                   <  1:2336851/100‑1 (MQ=255)
                                                      ggCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGa                                               >  2:172854/1‑100 (MQ=255)
                                                      ggCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATAAGACGCCCCGGCGTCGCATCCGAcaatg                                                 <  2:1067561/98‑5 (MQ=21)
                                                       gCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGAt                                              <  1:1342673/100‑1 (MQ=255)
                                                       gCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGAt                                              <  1:618907/100‑1 (MQ=255)
                                                         tCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGAttt                                            >  1:644839/1‑100 (MQ=255)
                                                           cGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTAc                                          <  2:1601588/100‑1 (MQ=255)
                                                            ggTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTAc                                          <  2:764025/99‑1 (MQ=255)
                                                            ggTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATAAGACGCCCCGGCGTCGCATCCGAcaatgtgca                                             <  2:1839084/96‑9 (MQ=21)
                                                               cTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCa                                      <  2:2374009/100‑1 (MQ=255)
                                                                ttgatgccggatgcggtgcaagcaccttatccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAc                                     >  1:1916801‑M2/36‑100 (MQ=255)
                                                                  tAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCAACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAc                                     <  2:2017525/98‑1 (MQ=255)
                                                                  gatgccgaatgaggtgcaagcaccttatccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCg                                   >  2:1628159‑M2/34‑100 (MQ=255)
                                                                   atgccggatgcggtgcaagcaccttatccggcATCAAGGCCTGCACATTGTCGGATGCGACGCCGGGGAGTCTTATCCGACCTACGATTTACTGCACCg                                   >  2:2586825‑M2/33‑99 (MQ=255)
                                                                   aGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGc                                  >  2:2782266/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGc                                  >  1:2141805/1‑100 (MQ=255)
                                                                     gccggatgcggtgcaagcaccttatccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCtt                                >  1:615643‑M2/31‑100 (MQ=255)
                                                                     GCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCtt                                >  1:2455021‑M1/1‑100 (MQ=255)
                                                                      CCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCTCATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCttt                               <  2:1694598‑M1/100‑1 (MQ=255)
                                                                       CGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTa                              >  2:814084‑M1/1‑100 (MQ=255)
                                                                       CGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTa                              >  2:1747170‑M1/1‑100 (MQ=255)
                                                                        GGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTAc                             >  1:270261‑M1/1‑100 (MQ=255)
                                                                         GATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACt                            >  1:2213676‑M1/1‑100 (MQ=255)
                                                                          ATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTc                           >  2:2267927‑M1/1‑100 (MQ=255)
                                                                             aGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGCGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCAcc                        >  2:777728/1‑100 (MQ=255)
                                                                              ggTGCTTGCACCGTATCCGGCATCAACGCCTGCACATTTTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCg                       >  2:1917653/1‑100 (MQ=255)
                                                                              ggTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCg                       >  2:2486180/1‑100 (MQ=255)
                                                                              ggTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCAGATGCGACGCCGGGGCGTCGTATCCGACCTACGATTTACTGCACCGCTTTACTCACCg                       >  2:1699754/1‑100 (MQ=255)
                                                                               gTGCTTGCGCCGCGTCTGGCATCCACGCCTTCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTCCACCGCTTTACTCAc                         <  2:2306325/97‑1 (MQ=37)
                                                                                tGCTTGCACCTCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGaa                     >  2:1721571/1‑100 (MQ=255)
                                                                                 gCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAAc                    <  1:2979294/100‑1 (MQ=255)
                                                                                 gCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAAc                    <  2:644838/100‑1 (MQ=255)
                                                                                    tGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCa                 <  1:890794/100‑1 (MQ=255)
                                                                                    tGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCa                 >  1:2354002/1‑100 (MQ=255)
                                                                                     gCACCGCATCCGGAATCAACGCCTGCACATTGTCGGCTGCGACGCCGGGGCGTCTTATCCGACCTCCGATTTGCTGCACCGCTTTACTCACCGAACTCa                 >  2:2480667/1‑99 (MQ=39)
                                                                                       aCCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATcg              >  1:1676964/1‑100 (MQ=255)
                                                                                        ccGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATcgc             <  1:2933283/100‑1 (MQ=255)
                                                                                           cATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCt          <  2:1350793/100‑1 (MQ=255)
                                                                                             tccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTa        <  1:1570678‑M2/94‑1 (MQ=255)
                                                                                              ccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAg       >  1:3019369‑M2/6‑100 (MQ=255)
                                                                                               cggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAgc      >  1:1261440‑M2/5‑100 (MQ=255)
                                                                                                ggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGTCCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCtt         <  2:1240196‑M2/93‑1 (MQ=255)
                                                                                                  cATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGcgcg   >  2:985743‑M2/2‑100 (MQ=255)
                                                                                                   |                                                                                                   
AGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGT  >  NC_000913/4323181‑4323379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.