| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 277679 = | NA (NA) | 5 (0.050) | 4/164 | NT | NA | noncoding (5/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 277704 = | NA (NA) | noncoding (30/67 nt) | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/277784‑277679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCA > NC_000913/277704‑277801 GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTA < 1:1863061/100‑1GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTA < 1:537958/100‑1 ATGTTTGTTCTGGCGGATGCGGCATAACGCTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATC > 2:2677452/1‑100 TGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCA < 1:588522/100‑1 TGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATC < 2:1842863/99‑1 TTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAGG > 2:964220/1‑100 TTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GAGCTGCGCTTATCAGG > 1:3059031/1‑100 TGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCC < 1:2489672/100‑1 GGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCG < 1:2379574/100‑1 GCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAA > 1:2330634/1‑100 GGCAATGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATGCGGCCTACAAAACAACAAAACGTTATGCCGCATC > 2:2583303/1‑95 TGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACA > 2:1422251/1‑100 ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCGACAAAACAACAAAACGTTAGGCCGCATCAGACAGAACAAACATGCCGTACGGATGGA > 2:2867412/1‑100 TCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAT > 2:2203731/1‑100 CAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATT > 2:1451022/1‑100 AGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTT > 2:2442661/1‑100 GCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCA < 2:1290712/100‑1 GCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCA < 1:1515669/100‑1 GCATGTTTGTTCTGGCGGATGCGGCATAACGTTTTGTGGTTTTGTAGGCCGGATAAGGCGCTTGTGCCGCCATCCGGCAATGCCTGAT‑‑GCGCTGCGCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/277784‑277679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCA > NC_000913/277704‑277801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |