New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 277679 =NA (NA)5 (0.050) 4/164 NT NA noncoding (5/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 277704 = NA (NA)noncoding (30/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 123 total aligned reads displayed.

CACGGTTGATTGGCGGGTGCTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACA  >  NC_000913/277580‑277777
                                                                                                   |                                                                                                    
cACGGTTGATTGGCGGGTGTTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAgg                                                                                                      <  2:940969/100‑1 (MQ=255)
 tgaaatccatccgtacggcatgtttgttctggcggatgcggcataacgttttgtggttttgtaggccggataaggcgcttgtgccgccatccggcaatGc                                                                                                     <  2:1290712‑M1/2‑1 (MQ=255)
  cGGTTGATTGGCGGGTGCTGTCGCACTACGCCTGCGGATATCGCGGCGTTAATAGCGCGTAGCTGCGGGTTTATCGGGCCTACATCGTTCATTGTAgg                                                                                                      <  2:1265719/98‑1 (MQ=255)
    gTTGATTGGCGGGTGCTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTg                                                                                                  >  2:1924410/1‑100 (MQ=255)
    gTTGATTGGCGGGTGCTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTg                                                                                                  >  2:2391505/1‑100 (MQ=255)
    aatccatccgtacggcatgtttgttctggcggatgcggcataacgttttgtggttttgtaggccggataaggcgcttgtgccgccatccggcaatGCCTg                                                                                                  >  2:1451022‑M1/96‑100 (MQ=255)
     atccatccgtacggcatgtttgttctggcggatgcggcataacgttttgtggttttgtaggccggataaggcgcttgtgccgccatccggcaatGCCTGa                                                                                                 >  2:2203731‑M1/95‑100 (MQ=255)
      tccatccgtacggcatgtttgttctgtctgatgcggcctaacgttttgttgttttgtcggccggataaggcgcttgtgccgccatccggcaatGCCTGAt                                                                                                >  2:2867412‑M1/94‑100 (MQ=255)
         ttGGCGGGTGCTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAag                                                                                             <  1:2383435/100‑1 (MQ=255)
              gggTGCTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAagcgcag                                                                                        <  1:1786643/100‑1 (MQ=255)
                  gCTGTCGCACCACGCCTGCGGATATCGCCGCTTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAagcgcagcg                                                                                      <  2:2682333/98‑1 (MQ=255)
                  gCTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAgcgcagcgc‑‑a                                                                                  <  2:1449666/100‑1 (MQ=255)
                  gCTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAgcgcagcgc‑‑a                                                                                  >  1:1801141/1‑100 (MQ=255)
                   cTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑At                                                                                 >  2:1667531/1‑100 (MQ=255)
                   cTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACACCGTTCATTGTAGGCCTGATAagcgcagcgc                                                                                     <  2:1179231/98‑1 (MQ=255)
                    tGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATc                                                                                <  2:2981005/100‑1 (MQ=255)
                    tGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATc                                                                                >  1:342674/1‑100 (MQ=255)
                     gTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCa                                                                               <  1:661897/100‑1 (MQ=255)
                      tCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAg                                                                              <  1:1418870/100‑1 (MQ=255)
                      tCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAg                                                                              <  1:1161256/100‑1 (MQ=255)
                       cGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAgg                                                                             >  1:1560910/1‑100 (MQ=255)
                       cGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAgg                                                                             >  2:317683/1‑100 (MQ=255)
                       cGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAgg                                                                             >  1:2433151/1‑100 (MQ=255)
                         tgttctggcggatgcggcataacgttttgtggttttgtaggccggataaggcgcttgtgccgccatccggcaatGCCTGATAAGCGCAGCGC‑‑ATCAGGCa                                                                           >  2:1422251‑M1/75‑100 (MQ=255)
                         caccacGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCa                                                                           >  2:2623854/1‑100 (MQ=255)
                           ccacGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCAtt                                                                         >  2:1118855/1‑100 (MQ=255)
                           ccacGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCAtt                                                                         >  2:2864393/1‑100 (MQ=255)
                           ccacGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCAtt                                                                         >  1:676376/1‑100 (MQ=255)
                            cacGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTg                                                                        >  2:1424422/1‑100 (MQ=255)
                            cacGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTg                                                                        <  1:953402/100‑1 (MQ=255)
                             acGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGc                                                                       >  1:2920523/1‑100 (MQ=255)
                               gCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCg                                                                     <  1:1846976/100‑1 (MQ=255)
                                ccTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCgg                                                                    >  1:343197/1‑100 (MQ=255)
                                ccTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCgg                                                                    <  2:1560898/100‑1 (MQ=255)
                                 cTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCgg                                                                    <  2:3043118/99‑1 (MQ=255)
                                 cTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGa                                                                   >  1:2439168/1‑100 (MQ=255)
                                  tGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGAt                                                                  <  1:2710576/100‑1 (MQ=255)
                                   gatgcggcataacgttttgttgttttgtaggccgcataaggcgcttgtgccgccatccggcaatGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGcc                                                                      >  2:2583303‑M1/65‑95 (MQ=255)
                                   gCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTATATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATg                                                                 <  2:2215102/100‑1 (MQ=255)
                                    cGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATgg                                                                >  1:2778684/1‑100 (MQ=255)
                                     ggATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGAtaag                                                               <  1:952997/100‑4 (MQ=255)
                                     ggATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATggc                                                               <  2:1296315/100‑1 (MQ=255)
                                      gATATCGCCGCGTTAAAAGCGCGAAGCTGATGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCCTTGCCGGATggcg                                                              >  1:2896531/1‑100 (MQ=255)
                                       atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATggcgg                                                             <  2:2483751/100‑1 (MQ=255)
                                        tatCGCGGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATggcgg                                                             <  2:2784381/99‑1 (MQ=255)
                                         atCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGca                                                           <  1:644698/100‑1 (MQ=255)
                                            gccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACaa                                                        >  1:2624262/1‑100 (MQ=255)
                                              cgcgTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAgc                                                      <  1:2669461/100‑1 (MQ=255)
                                                cgTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAgcgc                                                    >  1:983206/1‑100 (MQ=255)
                                                 gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                   <  1:1643598/100‑1 (MQ=255)
                                                  ttAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCt                                                  >  2:2257814/1‑100 (MQ=255)
                                                   tAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCtt                                                 >  2:1542192/1‑100 (MQ=255)
                                                     aaaGCGCGAAGCTGAGGGTTCATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCCACTTAt                                               >  2:1905568/1‑100 (MQ=255)
                                                          tttgtaggccggataaggcgcttgtgccgccatccggcaatGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGc                                          >  1:2330634‑M1/42‑100 (MQ=255)
                                                           cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                         <  1:2016775/100‑1 (MQ=255)
                                                           cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                         >  1:1360787/1‑100 (MQ=255)
                                                           cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                         <  2:2628146/100‑1 (MQ=255)
                                                             aaGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTa                                       <  1:2422508/100‑1 (MQ=255)
                                                             aaGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTa                                       <  2:1650872/100‑1 (MQ=255)
                                                              aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTAc                                      <  1:33816/100‑1 (MQ=255)
                                                               gCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACa                                     >  1:1549375/1‑100 (MQ=255)
                                                                 tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaa                                   <  1:1133363/100‑1 (MQ=255)
                                                                 tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaa                                   <  2:957246/100‑1 (MQ=255)
                                                                 tGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaa                                   >  1:913968/1‑100 (MQ=255)
                                                                  gAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACaaaa                                  >  2:654455/1‑100 (MQ=255)
                                                                   aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                 <  2:1360778/100‑1 (MQ=255)
                                                                   aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                 <  1:1033546/100‑1 (MQ=255)
                                                                   aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                 <  1:497561/100‑1 (MQ=255)
                                                                   aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                 <  1:2554202/100‑1 (MQ=255)
                                                                    gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                <  1:834115/100‑1 (MQ=255)
                                                                    gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                <  1:2031179/100‑1 (MQ=255)
                                                                    gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCAGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                <  1:1219060/100‑1 (MQ=255)
                                                                      gTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                              <  1:1854691/100‑1 (MQ=255)
                                                                        ttATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaa                            <  1:344529/100‑1 (MQ=255)
                                                                         tATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaaa                           >  1:936546/1‑100 (MQ=255)
                                                                           tCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAAc                         <  1:2170550/100‑1 (MQ=255)
                                                                            cGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACg                        <  2:313689/100‑1 (MQ=255)
                                                                              ggTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGtt                      >  2:1268309/1‑100 (MQ=255)
                                                                                tCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTAt                    <  2:226633/100‑1 (MQ=255)
                                                                                tCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTAt                    >  1:1655570/1‑100 (MQ=255)
                                                                                tCTACATCGTTCATTGTAGGCCAGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATCGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAAc                         <  2:751989/95‑1 (MQ=255)
                                                                                 cTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTagg                   >  2:1888447/1‑98 (MQ=255)
                                                                                 cTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTacg                   >  2:1888436/1‑98 (MQ=255)
                                                                                 cTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATg                   >  2:291155/1‑100 (MQ=255)
                                                                                  tACATCGTTCATTGTAGGCCTGATACGCGCAGCGC‑‑ATCAGGCATTGCCGGACGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                  >  2:2831128/1‑100 (MQ=255)
                                                                                  tACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                  >  2:2813869/1‑100 (MQ=255)
                                                                                    cATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                <  1:2250468/100‑1 (MQ=255)
                                                                                    cATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                >  2:3065970/1‑100 (MQ=255)
                                                                                    cATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                <  1:199344/100‑1 (MQ=255)
                                                                                       cGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCAt             <  1:1325695/100‑1 (MQ=255)
                                                                                         ttCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATcc           >  1:2910226/1‑100 (MQ=255)
                                                                                            cggcaatGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc        <  1:2379574‑M1/93‑1 (MQ=255)
                                                                                            aTTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc        <  1:2963132/100‑1 (MQ=255)
                                                                                             ggcaatGCCTGAT‑‑GCGCTGCGCTTATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCa       <  1:2489672‑M1/94‑1 (MQ=255)
                                                                                              tGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg      <  1:2623881/100‑1 (MQ=255)
                                                                                              tGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg      >  2:560770/1‑100 (MQ=255)
                                                                                              tGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg      <  1:1363811/100‑1 (MQ=255)
                                                                                               gTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGa     <  2:1223780/100‑1 (MQ=255)
                                                                                                 aGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaac   >  1:1069938/1‑100 (MQ=255)
                                                                                                  ggCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca  >  1:1708349/1‑100 (MQ=255)
                                                                                                   |                                                                                                    
CACGGTTGATTGGCGGGTGCTGTCGCACCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGC‑‑ATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACA  >  NC_000913/277580‑277777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.