New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2979753 =	78 (0.720)	13 (0.130)	10/168	NT	15.8%	coding (733/936 nt)	lysR	transcriptional activator of lysA; autorepressor
	?	NC_000913	2979785 =	65 (0.630)					coding (765/936 nt)	lysR	transcriptional activator of lysA; autorepressor

GGCGGTGCAGGGGGCGGATCAGGCTGACGGTGAACGGAACCGCAATACTGAACCGCCGCACCACTAAACCGCTTGCCGCATAATCTAGTGCGGTGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2979852‑2979753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGG  >  NC_000913/2979785‑2979883                                                                                                                                                                                                         GGCGGTGCAGGGGGCGGATCAGGCTGACGGTGAACGGAACCGCAATACTGAACCGCCGCACCACTAAACCGCTTGCCGCATAATCTAGTGCGGTGAGCGG                                                                                                     >  1:1707503/1‑100                                                   AACCGCCGCACCACTAAACCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGA                                                   >  1:1687515/1‑100                                                             CCACTAAACCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTGCCGTTCACCGTCAGCCTGATCCGCCCCC                                          >  2:2429021/1‑99                                                                  ctACCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACC                                    <  2:1581959/98‑1                                                                  AAACCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACC                                    >  1:61376/1‑100                                                                    tCCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGC                                  >  2:151580/2‑100                                                                    ACCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCag                                  >  1:1581972/1‑98                                                                    ACCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGC                                  >  1:917964/1‑100                                                                     CCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCCCCGTCAGCCTGATCCGCCCCCTGCACCGCC                                 >  2:2580976/1‑100                                                                     CCGCTTGCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCC                                 >  2:3052655/1‑100                                                                      CGCTTGCCGCATAATCTAGTGCGGTGAGCGGGTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCC                                >  2:1802874/1‑100                                                                         TTGCCGCAAAATCTAGTGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGGTCCGTTCACCGTCAGCCTGATCCGAACCCAGCA                                      >  2:2283506/1‑91                                                                          TGCCGCATAATCTAGTGCGGTGAGCGGGTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCA                            >  1:1676405/1‑100                                                                           GCCGCATAATCTAGTGCGGTGAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCAT                           >  2:1221257/1‑100                                                                                                 GCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAG     >  2:1369301/1‑100                                                                                                 GCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAG     >  1:917124/1‑100                                                                                                  CGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGT    >  1:877910/1‑100                                                                                                    GTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTcg     >  2:2523994/1‑95                                                                                                    GTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGG  <  2:2564502/100‑1                                                                                                    GTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGG  >  1:537249/1‑100                                                                                                                                                                                                         GGCGGTGCAGGGGGCGGATCAGGCTGACGGTGAACGGAACCGCAATACTGAACCGCCGCACCACTAAACCGCTTGCCGCATAATCTAGTGCGGTGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2979852‑2979753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGG  >  NC_000913/2979785‑2979883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.