New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2979753 =78 (0.720)13 (0.130) 10/168 NT 15.8% coding (733/936 nt) lysR transcriptional activator of lysA; autorepressor
?NC_000913 2979785 = 65 (0.630)coding (765/936 nt) lysR transcriptional activator of lysA; autorepressor

AGAAACCCACAGCGCCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGG  >  NC_000913/2979686‑2979884
                                                                                                   |                                                                                                   
gcggtgcagggggcggatcaggctgacggtgaacggaaccgcaatactgaaccgccgcaccactaaaCCGCTCACCGCACTAGATTATGCGGCAAGCGGt                                                                                                     >  1:917964‑M1/68‑100 (MQ=255)
ctggtgcagggggcggatcaggctgacggtgaacggaaccgcaatactgaaccgccgcaccactaaaCCGCTCACCGCACTAGATTATGCGGCAAGCGGt                                                                                                     >  1:1581972‑M1/68‑100 (MQ=255)
aGAAACCCACAGCGCCGCGTCAGTCTGAGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGt                                                                                                     <  2:1855409/100‑1 (MQ=255)
 gAAACCCACAGCGCCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGtt                                                                                                    >  2:1424048/1‑100 (MQ=255)
  ggtgcagggggcggatcaggctgacggtgaacggaaccgcaatactgaaccgccgcaccactaaaCCGCTCACCGCACTAGATTATGCGGCAAGCggtag                                                                                                   <  2:1581959‑M1/35‑3 (MQ=255)
  ggtgcagggggcggatcaggctgacggtgaacggaaccgcaatactgaaccgccgcaccactaaaCCGCTCACCGCACTAGATTATGCGGCAAGCGGttt                                                                                                   >  1:61376‑M1/66‑100 (MQ=255)
  aaaCCCACAGCGCCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGttt                                                                                                   <  1:621966/100‑1 (MQ=255)
   aaCCCACAGCGCCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGttt                                                                                                   <  2:6310/99‑1 (MQ=255)
     cccACAGCGCCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAg                                                                                                 <  1:2839745/99‑1 (MQ=255)
       cacaGCGCCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAgtgg                                                                                              >  1:918126/1‑100 (MQ=255)
        gggggcggatcaggctgacggtgaacggcaccgcaatactgaaccgccgcaccactaaaCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAgtgg                                                                                              >  2:2429021‑M1/60‑99 (MQ=255)
         caGCGGCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAgtgg                                                                                              <  2:2806680/98‑1 (MQ=255)
           gcgcCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTgcg                                                                                          <  1:2376976/100‑1 (MQ=255)
            cgccgcGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTgcgg                                                                                         >  2:2052705/1‑100 (MQ=255)
             tcttccgatctCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTgcggc                                                                                        <  2:394107/90‑1 (MQ=255)
               cgcgTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGcggcgg                                                                                      <  2:2250486/100‑1 (MQ=255)
                gcgTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGt                                                                                     >  1:1979907/1‑100 (MQ=255)
                 tcaggctgacggtgaacggaaccgcaatactgaaccgccgcaccactaaaCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGtt                                                                                    >  1:1687515‑M1/51‑100 (MQ=255)
                  gTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTc                                                                                   <  1:725541/100‑1 (MQ=255)
                  gTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTc                                                                                   <  1:2875500/100‑1 (MQ=255)
                    cAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAg                                                                                 <  2:1774204/100‑1 (MQ=255)
                       tCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAg                                                                                 <  2:2511849/97‑1 (MQ=255)
                       tCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTAt                                                                              >  2:2796070/1‑100 (MQ=255)
                         tGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTAtt                                                                             >  1:2603434/1‑99 (MQ=255)
                           cgcAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCg                                                                          >  1:1240516/1‑100 (MQ=255)
                           cgcAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCg                                                                          >  1:1439527/1‑100 (MQ=255)
                            gcAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATAATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCgg                                                                         <  2:1964248/100‑1 (MQ=255)
                             cAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGt                                                                        >  2:989978/1‑100 (MQ=255)
                             cAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGt                                                                        >  2:792207/1‑100 (MQ=255)
                                 ggTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCg                                                                    >  1:2204/1‑100 (MQ=255)
                                 ggTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCg                                                                    >  1:2054000/1‑100 (MQ=255)
                                    aCGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTc                                                                 >  2:3002759/1‑100 (MQ=255)
                                     cgggcgggGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTc                                                                 <  2:1787271/99‑1 (MQ=255)
                                     cgggcgggGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATAGCGGTTCCGTTCa                                                                >  1:1807953/1‑100 (MQ=255)
                                       gatctgggTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCAcc                                                              <  2:322647/95‑1 (MQ=255)
                                        gcgggGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCg                                                             <  1:2027964/100‑1 (MQ=255)
                                           ggggTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGATCCGTTCACCGTCa                                                          >  2:796024/1‑100 (MQ=255)
                                            gggTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCAccagatc                                                         >  1:322649/1‑95 (MQ=255)
                                                 ggtaTTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCCGCCTGa                                                    >  2:1209441/1‑100 (MQ=255)
                                                 ggtaTTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGa                                                    >  1:1453509/1‑100 (MQ=255)
                                                 ggtaTTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGa                                                    >  2:2610436/1‑100 (MQ=255)
                                                 aaccgccgcaccactaaaccgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGa                                                    >  1:1687515‑M2/51‑100 (MQ=255)
                                                   taTTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCAGCGTCAGGCTGATc                                                  >  2:1338737/1‑100 (MQ=255)
                                                   taTTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATc                                                  <  1:2582691/100‑1 (MQ=255)
                                                    aTTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATcc                                                 <  1:2286131/100‑1 (MQ=255)
                                                     tttCGGTGGTTAACCCGCTCGCCGCACTAGATTATGCGGCCAGCGGTTTAGTCGTGCGGCGGTCCAGTATTGCGGTTCCGTTCCCCGGCAGCCTGATc                                                  <  2:1293910/98‑1 (MQ=255)
                                                     tttCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATc                                                  <  2:1235868/98‑1 (MQ=255)
                                                     tttCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCg                                                <  1:1685793/100‑1 (MQ=255)
                                                       tCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTCCCGTTCACCGTCAGCCTGATCCGcc                                              >  2:1963294/1‑100 (MQ=255)
                                                         ggtggtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGcccc                                            >  1:732895/1‑100 (MQ=255)
                                                           ccactaaaccgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTGCCGTTCACCGTCAGCCTGATCCGccccc                                           >  2:2429021‑M2/41‑99 (MQ=255)
                                                             gtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGc                                        <  2:1240508/100‑1 (MQ=255)
                                                             gtTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGc                                        >  2:1707488/1‑100 (MQ=255)
                                                              ttAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGc                                        >  2:963961/1‑99 (MQ=255)
                                                              ttAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCa                                       <  2:2603409/100‑1 (MQ=255)
                                                                ctaccgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCAcc                                     <  2:1581959‑M2/65‑1 (MQ=255)
                                                                aaaccgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCAcc                                     >  1:61376‑M2/36‑100 (MQ=255)
                                                                 aCCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCg                                    >  1:190792/1‑100 (MQ=255)
                                                                  tccgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGc                                   >  2:151580‑M2/34‑100 (MQ=255)
                                                                  accgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGcaccag                                   >  1:1581972‑M2/34‑98 (MQ=255)
                                                                  accgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGc                                   >  1:917964‑M2/34‑100 (MQ=255)
                                                                   ccgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCCCCGTCAGCCTGATCCGCCCCCTGCACCGcc                                  >  2:2580976‑M2/33‑100 (MQ=255)
                                                                   ccgcttgccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGcc                                  >  2:3052655‑M2/33‑100 (MQ=255)
                                                                   ccGCTCACCGCACTAGAGTATGCGGCAAGCGGTCTAGTGGTGCGGCAGCTCAGTCTTGCGGTTCCGTTCACCGTCCGCCTGATCCGCCCCCTGCACCGcc                                  >  2:992931/1‑100 (MQ=255)
                                                                   CCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGcc                                  >  1:1707503‑M1/1‑100 (MQ=255)
                                                                    cgcttgccgcataatctagtgcggtgagcggGTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGccc                                 >  2:1802874‑M2/32‑100 (MQ=255)
                                                                       ttgccgcaaaatctagtgcggcaagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGGTCCGTTCACCGTCAGCCTGATCCGAACCCAGCa                                       >  2:2283506‑M2/29‑91 (MQ=255)
                                                                        tgccgcataatctagtgcggtgagcggGTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGtca                             >  1:1676405‑M2/28‑100 (MQ=255)
                                                                        cACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGtca                             >  2:2655894/1‑100 (MQ=255)
                                                                         gccgcataatctagtgcggtgagcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGtcat                            >  2:1221257‑M2/27‑100 (MQ=255)
                                                                         aCCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGtcat                            >  1:2736612/1‑100 (MQ=255)
                                                                          ccGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGtcatc                           >  2:969948/1‑100 (MQ=255)
                                                                          ccGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGtcatc                           <  2:2002686/100‑1 (MQ=255)
                                                                           cGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGtcatca                          <  1:1379840/100‑1 (MQ=255)
                                                                           cGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGtcatca                          >  2:57161/1‑100 (MQ=255)
                                                                            gCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAg                         >  1:3020343/1‑100 (MQ=255)
                                                                            gCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAg                         <  2:2356684/100‑1 (MQ=255)
                                                                             cACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAgc                        <  1:827899/100‑1 (MQ=255)
                                                                              aCTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAgcg                       <  2:1639373/100‑1 (MQ=255)
                                                                              aCTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAgcg                       <  1:989983/100‑1 (MQ=255)
                                                                              aCTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTAAGTATTGCGGTTCCGTTCACCGTCAGCCTGCTCCGCCCCCTGCACCGCCCGTCATAAgcg                       <  2:1231994/100‑1 (MQ=255)
                                                                                 aGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTg                    <  1:33758/100‑1 (MQ=255)
                                                                                  gATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTgg                   >  2:1390744/1‑100 (MQ=255)
                                                                                  gATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTg                    <  2:56069/99‑1 (MQ=255)
                                                                                   aTTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTgg                   <  2:2947972/99‑1 (MQ=255)
                                                                                    ttATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGtt                 >  1:460485/1‑100 (MQ=255)
                                                                                     tttGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTc                <  2:280487/98‑1 (MQ=255)
                                                                                     tATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTc                >  2:106557/1‑100 (MQ=255)
                                                                                        gCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAgg             <  2:2999099/100‑1 (MQ=255)
                                                                                        gCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAgg             <  2:63731/100‑1 (MQ=255)
                                                                                           gCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGt          >  2:68766/1‑100 (MQ=255)
                                                                                            cAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGtt         >  2:1779821/1‑100 (MQ=255)
                                                                                             aaGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGttt        <  1:1147661/100‑1 (MQ=255)
                                                                                               gcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAg      >  1:917124‑M2/5‑100 (MQ=255)
                                                                                               gcggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAg      >  2:1369301‑M2/5‑100 (MQ=255)
                                                                                                cggTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGt     >  1:877910‑M2/4‑100 (MQ=255)
                                                                                                  gTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGcgtttcg      >  2:2523994‑M2/2‑95 (MQ=255)
                                                                                                  gTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTgg   <  2:2564502‑M2/99‑1 (MQ=255)
                                                                                                  gTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTgg   >  1:537249‑M2/2‑100 (MQ=255)
                                                                                                   tttAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCGCCTGCACCGCCCGTCATCAGCGCTGGTTAAGGCGTTTAGTggg  <  2:1214331/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AGAAACCCACAGCGCCGCGTCAGTCTGCGCAATGGTACGGGCGGGGGTAGGTATTTCGGTGGTTAACCCGCTCACCGCACTAGATTATGCGGCAAGCGGTTTAGTGGTGCGGCGGTTCAGTATTGCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGG  >  NC_000913/2979686‑2979884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.