| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4459872 | 137 (0.890) | 10 (0.070) | 10/180 | 18.9 | 7.5% | intergenic (+17/+28) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein |
| ? | NC_000913 | = 4459886 | 122 (0.870) | intergenic (+31/+14) | cybC/nrdG | pseudogene, truncated cytochrome b562; cytochrome b(562)/anaerobic ribonucleotide reductase activating protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4459765‑4459872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccctgttACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTT < NC_000913/4459886‑4459788 GCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATT < 2:2485968/100‑1 GGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTT > 2:2351434/1‑98 GCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCC < 2:849699/100‑1 GCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCC < 2:846104/100‑1 GCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCC < 2:2184942/100‑1 nAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT > 2:3118820/2‑100 CAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT > 2:1324387/1‑100 CAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGAACCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCC > 2:3868185/1‑99 AAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTG < 1:2897169/100‑1 ATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTT > 1:1036353/1‑100 TAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAG > 1:2500063/1‑100 GAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAAC < 1:2460624/100‑1 AAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACA < 2:820084/100‑1 CGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGG < 1:1526433/100‑1 GGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAAT < 2:683806/100‑1 GGCTGCTGCAGAACAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAAT > 1:2533438/1‑100 atctCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCAGTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAA < 2:3191833/94‑1 GCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGG < 2:2500052/100‑1 CTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCAGTTCCCTGTTACCTGAGTGCAGGCAACAGGGAAAAGAtcg > 1:3191849/1‑97 AGCAACTGAACACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACTTGAGTGCAGGCAACAGGGAAATGAGGAATTAAC < 2:2533427/100‑1 TCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGC < 1:96365/100‑1 TCCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGC < 1:1347533/100‑1 CCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGC < 1:3347340/100‑1 GTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTC < 2:323432/100‑1 TACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTT > 1:20462/1‑100 TACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTT > 2:3375268/1‑100 TACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTT < 2:647136/100‑1 TACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTT < 1:3167846/100‑1 GCTGGCAAATGAAGGTAAAGTAAAAGAAGCGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4459765‑4459872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccctgttACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTTTCAGTTGCTCTGCAGCAGCCTGCGCTTCTT < NC_000913/4459886‑4459788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |