| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4040867 = | NA (NA) | 6 (0.050) | 6/170 | NT | NA | noncoding (4/36 nt) | REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4040893 = | NA (NA) | noncoding (30/36 nt) | REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TATTAATGATGTTGAGGGGCTGGCTGATTTTGTGGTGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4040969‑4040867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT > NC_000913/4040893‑4040991 TATTAATGATGTTGAGGGGCTGGCTGATTTTGTGGTGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCA > 2:1614268/1‑100TATTAATGATGTTGAGGGGCTGGCTGATTTTGTGGTGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCA > 2:3607547/1‑100 ATTAATGATGTTGAGGGGCTGGCTGATTTTGTGGTGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCAT > 1:1350220/1‑100 TTAATGATGTTGAGGGGCTGGCTGATTTTGTGGTGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCATC < 2:103667/100‑1 TTAATGATGTTGAGGGGCTGGCTGATTTTGTGGTGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCAT > 1:1426339/1‑99 TTAATGATGTTGAGGGGCTGGCTGATTTTGAGGAGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCGGCGTCGCATC > 1:2435861/1‑100 TAATGATGTTGAGGGGCTGGCTGATTTTGTGGTGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCATCC > 2:2164778/1‑100 CAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCAC > 1:2868082/1‑100 GTAGGCTGGATAAGACGCGCCAGCGTCGCATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAC > 1:293452/1‑100 GCTGGATAAGACTCGCCAGCGTCGCATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCCCAAAATCAGCCCGCCCCTCAAC > 1:678536/1‑96 CTGGATAAGACGCGCCAGCGTCGCATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCAT < 2:293452/100‑1 GGATAAGACGCGCCAGCGTCGCATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTA > 1:594512/1‑100 TAAGACGCGCCAGCGTCGCATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATA > 2:3332015/1‑100 ATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAACTCAGCCAGCCCCTCAACCTCATTAATATCCAGTACTCCGACAT > 1:2900734/1‑97 ATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAA > 1:3311933/1‑100 ATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAA > 2:2611165/1‑100 ATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAA > 1:3207785/1‑100 ATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAA > 1:3056703/1‑100 CCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGA < 1:2564329/100‑1 CCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGA > 2:2867733/1‑100 CCAGCCTACTCTCGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTACTGCGACATCAAGA < 1:3312102/100‑1 CAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT < 2:3627775/100‑1 CAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT < 1:1311933/100‑1 CAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT > 1:615761/1‑100 CAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT > 1:490059/1‑100 CAGCCTACTCCTGCTTATCCGTTCTGCTTTTGCATCCCCTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT < 1:349558/100‑1 CAGCCGACTCTTGCTTATCCGTTCTGCTCTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAG < 1:2911182/98‑1 TATTAATGATGTTGAGGGGCTGGCTGATTTTGTGGTGGAGTGGATGCAAAAGCAGAACGGATAAGCAAGAGTAGGCTGGATAAGACGCGCCAGCGTCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4040969‑4040867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT > NC_000913/4040893‑4040991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |