BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4040867 =	NA (NA)	6 (0.050)	6/170	NT	NA	noncoding (4/36 nt)	REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	4040893 =	NA (NA)	6 (0.050)	6/170	NT	NA	noncoding (30/36 nt)	REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 204 total aligned reads displayed.

TGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT  >  NC_000913/4040795‑4040991

atgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctGGATGCGACGCTGGCGCGTCTTATCCAg                                                                                                   <  2:293452‑M1/28‑1 (MQ=255)

 gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGc                                                                                                  >  2:1035886/1‑100 (MQ=255)

 gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGc                                                                                                  >  2:1387645/1‑100 (MQ=255)

  ccAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTAACAAAAAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGcc                                                                                                 <  1:863773/100‑1 (MQ=18)

   cAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCt                                                                                                >  1:235872/1‑100 (MQ=255)

     gttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctGGATGCGACGCTGGCGCGTCTTATCCAGCCTAc                                                                                              >  1:293452‑M1/68‑100 (MQ=255)

     gttgaggggcgggctgattttggggtggagtggatgcaaaagcagaacggataagcaagagtaggctGGATGCGACGCTGGCGAGTCTTATCCAGc                                                                                                  >  1:678536‑M1/68‑96 (MQ=255)

     ggCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTAc                                                                                              <  1:3387465/100‑1 (MQ=255)

     ggCATCAAATTAAGCAGAAGGCCATCCGGGCGGGTGGCCTTTTTGCATTGGCGCACAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCt                                                                                                <  1:1638131/98‑1 (MQ=18)

       cATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActc                                                                                            >  2:1311939/1‑100 (MQ=255)

       cATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActc                                                                                            >  2:646929/1‑100 (MQ=255)

        aTCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActct                                                                                           >  2:855820/1‑100 (MQ=255)

        aTCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActct                                                                                           <  1:401176/100‑1 (MQ=255)

        aTCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActct                                                                                           >  1:3056734/1‑100 (MQ=255)

         tCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCtt                                                                                          <  1:3481246/100‑1 (MQ=255)

         tCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCtt                                                                                          >  1:1930610/1‑100 (MQ=255)

         tCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCtt                                                                                          >  2:1021551/1‑100 (MQ=255)

          cAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTg                                                                                         <  2:1871909/100‑1 (MQ=255)

           aaaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGc                                                                                        <  2:2550693/100‑1 (MQ=255)

            aaTTAAGCAGAAGGCCGTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCt                                                                                       <  1:2167518/100‑1 (MQ=255)

            aaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCt                                                                                       >  2:483180/1‑100 (MQ=255)

              ttAAGCAGAAGGCGATCTTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCTGATGCGACGCTTGGGCGTCTTATCCAGCCTACTCTTGCTTa                                                                                     <  1:2962909/100‑1 (MQ=18)

                 aGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATcc                                                                                  <  1:2974952/100‑1 (MQ=255)

                 aGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATcc                                                                                  >  2:67062/1‑100 (MQ=255)

                  caaaaaGGCCATCCGTCAGGATGGCCTTCTTACATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTTCTTATCCg                                                                                 >  1:91643/5‑100 (MQ=18)

                   cAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGt                                                                                <  1:308847/100‑1 (MQ=255)

                      aaGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCt                                                                             <  2:1606809/100‑1 (MQ=255)

                       aGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTg                                                                            >  1:1265323/1‑100 (MQ=255)

                        ggCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGc                                                                           <  2:1991937/100‑1 (MQ=255)

                        ggCCATCCTGACGGATGACCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGc                                                                           >  1:2240950/1‑100 (MQ=255)

                         gCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCt                                                                          <  1:599721/100‑1 (MQ=255)

                          ccATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtt                                                                         >  1:1589078/1‑100 (MQ=255)

                           cATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCttt                                                                        >  2:3185314/1‑100 (MQ=255)

                            aTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                                       <  1:3030168/100‑1 (MQ=255)

                            aTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                                       <  1:3190926/100‑1 (MQ=255)

                            aTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                                       <  1:2072023/100‑1 (MQ=255)

                            aTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                                                       <  2:1784384/100‑1 (MQ=255)

                             tCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTg                                                                      <  1:1790130/100‑1 (MQ=255)

                             tCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTg                                                                      <  2:575165/100‑1 (MQ=255)

                                tGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAt                                                                   >  1:3673640/1‑100 (MQ=255)

                                    ggATGGCCTTTTTGCATTGGCGCAGAAAAAAACGCCGGATGCGACGCTCGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccac                                                               <  1:2058128/100‑1 (MQ=255)

                                    ggATGGCCTTTTTGCATTGGCGCAAAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccac                                                               <  1:1498784/100‑1 (MQ=255)

                                     gATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccact                                                              <  2:2662176/100‑1 (MQ=255)

                                         tccTTTTTGCATTGGCGCAGAAAAAAATGCCGGATTCGACGCTTGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                                          <  1:3165608/99‑1 (MQ=255)

                                         gCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                                          <  2:1193450/100‑1 (MQ=255)

                                         gCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                                          >  2:432489/1‑100 (MQ=255)

                                         gCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactcaac                                                          >  1:3136481/1‑100 (MQ=255)

                                         caaaagcagaacggataagcaagagtaggctggataagacgcgccagcgtcgcatccAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                                          >  1:2868082‑M2/58‑100 (MQ=255)

                                          ccTTTTTTCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacc                                                         >  1:2578134/1‑100 (MQ=255)

                                          ccTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacc                                                         <  1:3315906/100‑1 (MQ=255)

                                                tGCATTGGCGCAGAAAAAAATGCCGTATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACaaa                                                    <  1:1713872/99‑1 (MQ=255)

                                                tGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACaaaa                                                   >  1:2711654/1‑100 (MQ=255)

                                                 gCATTGGCGCAGAAAAAAATGCCGGATGCGACGCCGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAAt                                                  <  2:228471/100‑1 (MQ=255)

                                                  cATTCGCGCAGAAAAAAATGCCGGATGCGTCGCTGGCGCGTCTTATCCAGCCTACGCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATc                                                 <  1:1201633/100‑1 (MQ=255)

                                                    ttGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcag                                               <  1:2764255/100‑1 (MQ=255)

                                                     tGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagc                                              <  2:3244952/100‑1 (MQ=255)

                                                       gcgcAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagcca                                            >  2:3059600/1‑100 (MQ=255)

                                                       gcgcAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagcca                                            <  1:1297248/100‑1 (MQ=255)

                                                        cgcAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagcca                                            >  2:1637821/1‑99 (MQ=255)

                                                         gcAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagccagc                                          <  2:2696908/100‑1 (MQ=255)

                                                          cAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTACTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCagccagcc                                         >  1:1471585/1‑100 (MQ=255)

                                                              aaaaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc                                     >  2:3016965/1‑100 (MQ=255)

                                                              aaaaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc                                     >  2:2937155/1‑100 (MQ=255)

                                                              aaaaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc                                     >  2:821084/1‑100 (MQ=255)

                                                              aaaaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc                                     >  2:3457953/1‑100 (MQ=255)

                                                                aaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCaa                                   >  1:2687870/1‑100 (MQ=255)

                                                                aaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCGTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc                                     <  2:718469/98‑1 (MQ=255)

                                                                 aaaTTCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTTCTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAc                                  <  1:1393401/100‑1 (MQ=255)

                                                                 aaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCaa                                   >  1:3402179/1‑99 (MQ=255)

                                                                 aaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAc                                  >  2:1130347/1‑100 (MQ=255)

                                                                  aaTGCCGGATGCGACGCTGGCGTGTCTTATCTAGCCTGCTCTTGCTTCTCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAca                                 <  1:2500095/100‑1 (MQ=39)

                                                                  aaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAca                                 <  2:2722175/100‑1 (MQ=255)

                                                                    tGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatc                               <  2:2617638/100‑1 (MQ=255)

                                                                      ccGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatcat                             <  2:3563959/100‑1 (MQ=255)

                                                                      ccGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatcat                             <  1:1130341/100‑1 (MQ=255)

                                                                        GGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTa                           >  2:2164778‑M1/1‑100 (MQ=255)

                                                                         GATGCGACGCCGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCTCCTCAAAATCAGCCAGCCCCTCAACATCATTaa                          >  1:2435861‑M1/1‑100 (MQ=255)

                                                                           taagacgcgccagcgtcgcatccAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAata                        >  2:3332015‑M2/24‑100 (MQ=255)

                                                                           TGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAata                        >  2:3607547‑M1/1‑100 (MQ=255)

                                                                             cGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATc                      >  2:1048613/1‑100 (MQ=255)

                                                                             cGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATc                      >  1:1619450/1‑100 (MQ=255)

                                                                              gACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATcc                     <  1:1021545/100‑1 (MQ=255)

                                                                                cGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAg                   <  1:1387638/100‑1 (MQ=255)

                                                                                 gCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGt                  >  1:1044231/1‑100 (MQ=255)

                                                                                 gCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGt                  <  2:1745630/100‑1 (MQ=255)

                                                                                 gCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGt                  <  1:1554087/100‑1 (MQ=255)

                                                                                     gcgcGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATg              <  1:553277/100‑1 (MQ=255)

                                                                                      cgcgTCTTATCCAGCCTCCTCTCGCTTATCCGTGCTGCTTTTGCATCCACTCCACAACAAAATCAGCCAGCCCCTCAACATCCTTAATATCCAGTAATGc             <  1:892193/100‑1 (MQ=255)

                                                                                        cgTCTTATCCAGCCTACTCTTGCTTATCAGTTCTGCTTTTGCATCTACTCCACCTCAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCg            >  1:725033/1‑99 (MQ=255)

                                                                                         gTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGAc          >  1:762287/1‑100 (MQ=255)

                                                                                           cTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACAt        >  2:2772390/1‑100 (MQ=255)

                                                                                             tATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCa      <  1:2683468/100‑1 (MQ=255)

                                                                                             tATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCa      >  1:132627/1‑100 (MQ=255)

                                                                                              atccAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCaa     >  2:2611165‑M2/5‑100 (MQ=255)

                                                                                              atccAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCaa     >  1:3311933‑M2/5‑100 (MQ=255)

                                                                                              atccAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCaa     >  1:3207785‑M2/5‑100 (MQ=255)

                                                                                                ccAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGa   <  1:2564329‑M2/98‑1 (MQ=255)

                                                                                                 cAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAt  >  1:615761‑M2/2‑100 (MQ=255)

                                                                                                 cAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAt  <  2:3627775‑M2/99‑1 (MQ=255)

                                                                                                 cAGCCGACTCTTGCTTATCCGTTCTGCTCTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAg    <  1:2911182‑M2/97‑1 (MQ=255)

TGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTAATATCCAGTAATGCGACATCAAGAT  >  NC_000913/4040795‑4040991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.