New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4040867 =NA (NA)6 (0.050) 6/170 NT NA noncoding (4/36 nt) REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4040893 = NA (NA)noncoding (30/36 nt) REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences REP292 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 218 total aligned reads displayed.

GTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTA  >  NC_000913/4040768‑4040966
                                                                                                   |                                                                                                   
gTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCg                                                                                                     <  2:3694535/100‑1 (MQ=255)
atcttgatgtcgcattactggatattaatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctg                                                                                                     >  1:490059‑M1/100‑100 (MQ=255)
atcttgatgtcgcattactggatattaatgatgttgaggggctggctgattttgtggtggaggggatgcaaaagcagaacggataagcaggagtaggctg                                                                                                     <  1:349558‑M1/1‑1 (MQ=255)
 tcttgatgtcgcattactggatattaatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctgg                                                                                                    >  2:2867733‑M1/99‑100 (MQ=255)
 tcttgatgtcgcagtactggatattaatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcgagagtaggctgg                                                                                                    <  1:3312102‑M1/2‑1 (MQ=255)
 tGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAGTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCg                                                                                                     >  1:1040799/1‑99 (MQ=255)
   ttgatgtcgcattactggatattaatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctGGAt                                                                                                  >  1:3056703‑M1/97‑100 (MQ=255)
   gCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGAt                                                                                                  >  1:1756070/1‑100 (MQ=255)
     gggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGc                                                                                                >  1:1208602/1‑100 (MQ=255)
      ggCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCg                                                                                               >  2:2363665/1‑100 (MQ=255)
      atgtcggagtactggatattaatgaggttgaggggctggctgagtttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctGGAt                                                                                                  >  1:2900734‑M1/94‑97 (MQ=255)
        cAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGAc                                                                                             <  2:1145320/100‑1 (MQ=255)
          ggACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGc                                                                                           >  1:3205417/1‑100 (MQ=255)
           gACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCt                                                                                          >  1:1005763/1‑100 (MQ=255)
              gcccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGgc                                                                                       <  2:2904645/100‑1 (MQ=255)
               cgcgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGgcg                                                                                      >  2:2506796/3‑100 (MQ=255)
               cccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGgcg                                                                                      <  1:2998835/100‑1 (MQ=255)
                ccgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGgcg                                                                                      <  1:2887571/99‑1 (MQ=255)
                 cgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGcgcg                                                                                    <  2:2148515/100‑1 (MQ=255)
                 cgccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGcgcg                                                                                    <  2:1005769/100‑1 (MQ=255)
                   ccATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTc                                                                                  <  1:2869473/100‑1 (MQ=255)
                    cATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCt                                                                                 <  2:837166/100‑1 (MQ=255)
                     aTAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGTATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCATCtt                                                                                <  1:2363852/100‑1 (MQ=255)
                      tattaatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctGGATGCGACGCTGGCGCGTCTTa                                                                               >  2:3332015‑M1/78‑100 (MQ=255)
                      tAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCtt                                                                                >  1:1436472/1‑99 (MQ=255)
                        aaCTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATc                                                                             <  2:901833/100‑1 (MQ=255)
                        aaCTGCCAGGCATCAAATTAAGCAGAAGGCCAGCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATc                                                                             <  1:1311536/100‑1 (MQ=255)
                         taatgatgttgaggggctggctgattttgtggtggagtggatgcaaaagcagaacggataagcaagagtaggctGGATGCGACGCTGGCGCGTCTTATcc                                                                            >  1:594512‑M1/75‑100 (MQ=255)
                            gCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGc                                                                         >  2:1387645/1‑100 (MQ=255)
                              cAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCt                                                                       >  1:1800780/1‑100 (MQ=255)
                              cAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATACGACGCTGGCGAGTCTTCTCAGGCCt                                                                       >  1:613233/1‑100 (MQ=17)
                               aGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGcc                                                                        <  1:2059011/98‑1 (MQ=255)
                                gttgaggggcgggctgattttggggtggagtggatgcaaaagcagaacggataagcaagagtaggctGGATGCGACGCTGGCGAGTCTTATCCAGc                                                                         >  1:678536‑M1/68‑96 (MQ=255)
                                ggCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCtc                                                                      >  1:3301955/1‑98 (MQ=255)
                                  cATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActc                                                                   >  2:2641920/1‑100 (MQ=255)
                                  cATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActc                                                                   >  1:1606801/1‑100 (MQ=255)
                                  cATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActc                                                                   >  1:2034478/1‑100 (MQ=255)
                                  cATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTActc                                                                   >  2:1311939/1‑100 (MQ=255)
                                    ttaaaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCtt                                                                 >  1:1173935/3‑100 (MQ=255)
                                    tCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCtt                                                                 >  1:3317734/1‑100 (MQ=255)
                                     cAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTg                                                                <  2:1871909/100‑1 (MQ=255)
                                      aaaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTATGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGc                                                               >  2:2605294/1‑100 (MQ=255)
                                       aaTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCt                                                              >  2:483180/1‑100 (MQ=255)
                                        aTTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCtt                                                             >  2:658049/1‑100 (MQ=255)
                                         ttAAGCAGAAGGCGATCTTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCTGATGCGACGCTTGGGCGTCTTATCCAGCCTACTCTTGCTTa                                                            <  1:2962909/100‑1 (MQ=18)
                                             caaaaaGGCCATCCGTCAGGATGGCCTTCTTACATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTTCTTATCCg                                                        >  1:91643/5‑100 (MQ=18)
                                               tgAAGGCCATCCTGACGGATGGCCTTTTTGCATTCGCGCAGAAAAAAATGCCGGCTGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGtt                                                      <  1:308835/99‑1 (MQ=255)
                                               aGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGtt                                                      <  2:1640186/100‑1 (MQ=255)
                                                gAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTc                                                     <  2:1066439/100‑1 (MQ=255)
                                                 aaGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCt                                                    <  1:2517718/100‑1 (MQ=255)
                                                 aaGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCt                                                    <  2:1606809/100‑1 (MQ=255)
                                                 aaGGCCATCCTGACGGATGGCCTTTTTGCAGTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCt                                                    <  1:2567517/100‑1 (MQ=255)
                                                  aGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTg                                                   >  1:1265323/1‑100 (MQ=255)
                                                   ggCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGc                                                  <  2:3263074/100‑1 (MQ=255)
                                                     ccATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtt                                                >  1:3114519/1‑100 (MQ=255)
                                                       aTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                              <  2:1784384/100‑1 (MQ=255)
                                                       aTCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCtttt                                              <  1:3190926/100‑1 (MQ=255)
                                                        tCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTg                                             <  2:575165/100‑1 (MQ=255)
                                                          cTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCa                                           <  2:3234279/100‑1 (MQ=255)
                                                           tGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAt                                          >  1:3673640/1‑100 (MQ=255)
                                                            gACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtc                                         >  2:1490049/1‑100 (MQ=255)
                                                             aCGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtcc                                        <  2:817931/100‑1 (MQ=255)
                                                              cGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtcca                                       >  2:2124644/1‑100 (MQ=255)
                                                               ggATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccac                                      <  2:1031917/100‑1 (MQ=255)
                                                               ggATGGCCTTTTTGCATTGGCGCAAAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccac                                      <  1:1498784/100‑1 (MQ=255)
                                                                gATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccact                                     <  1:617032/100‑1 (MQ=255)
                                                                  tGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCTGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactcc                                   >  1:2215506/1‑100 (MQ=255)
                                                                    tccTTTTTGCATTGGCGCAGAAAAAAATGCCGGATTCGACGCTTGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                 <  1:3165608/99‑1 (MQ=255)
                                                                    gCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                 <  2:1193450/100‑1 (MQ=255)
                                                                    gCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCAtccactccac                                 >  2:1958229/1‑100 (MQ=255)
                                                                     cttttttGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacc                                <  1:2687330/98‑1 (MQ=255)
                                                                     ccTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTccacc                                <  1:1633133/100‑1 (MQ=255)
                                                                       tttttGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCcaccac                              <  1:3389675/100‑1 (MQ=255)
                                                                        ttttGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACcaca                             >  1:396753/1‑100 (MQ=255)
                                                                           tGCATTGGCGCAGAAAAAAATGCCGTATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACaaa                           <  1:1713872/99‑1 (MQ=255)
                                                                           tGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACaaaa                          >  1:2711654/1‑100 (MQ=255)
                                                                            gCATTGGCGCAGAAAAAAATGCCGGATGCGACGCCGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAAt                         <  2:228471/100‑1 (MQ=255)
                                                                              aTTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATca                       <  1:2309180/100‑1 (MQ=255)
                                                                               ttGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcag                      <  1:2764255/100‑1 (MQ=255)
                                                                               ttGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcag                      >  1:2662306/1‑100 (MQ=255)
                                                                                 ggCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagcc                    >  2:2766094/1‑100 (MQ=255)
                                                                                 ggCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagcc                    <  2:3664159/100‑1 (MQ=255)
                                                                                  gcgcAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagcca                   >  2:3059422/1‑100 (MQ=255)
                                                                                    gcAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATcagccagc                 <  2:2696908/100‑1 (MQ=255)
                                                                                     cAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTACTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCagccagcc                >  1:1471585/1‑100 (MQ=255)
                                                                                      aGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGccc               <  1:1559868/100‑1 (MQ=255)
                                                                                       gAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGcccc              <  1:1392435/100‑1 (MQ=255)
                                                                                         aaaaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc            >  2:3457953/1‑100 (MQ=255)
                                                                                         aaaaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc            >  2:2937155/1‑100 (MQ=255)
                                                                                         aaaaaaTGCCGGATGCGACGATGGTTCGTCTTATTCAGCGTACTCTTGCTTCTCCGTTCTGCTGTTGCATCCACTCAACGACAAAATcag                      >  1:2932799/1‑90 (MQ=255)
                                                                                          aaaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCa           <  2:3152795/100‑1 (MQ=255)
                                                                                           aaaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCGTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTc            <  2:718469/98‑1 (MQ=255)
                                                                                            aaaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAc         >  1:2079526/1‑100 (MQ=255)
                                                                                             aaTGCCGGATGCGACGCTGGCGTGTCTTATCTAGCCTGCTCTTGCTTCTCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAca        <  1:2500095/100‑1 (MQ=39)
                                                                                             aaTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAca        <  2:2722175/100‑1 (MQ=255)
                                                                                              aTGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcat       <  2:2616382/100‑1 (MQ=255)
                                                                                                 ccGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatcat    <  2:3563959/100‑1 (MQ=255)
                                                                                                 ccGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatcat    <  1:1130341/100‑1 (MQ=255)
                                                                                                 ccGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatcat    >  1:3436734/1‑100 (MQ=255)
                                                                                                 ccGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAAcatcat    >  1:781855/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCGGATGCGACGCTGGCGCGTCTTATCCAGCCTACTCTTGCTTATCCGTTCTGCTTTTGCATCCACTCCACCACAAAATCAGCCAGCCCCTCAACATCATTA  >  NC_000913/4040768‑4040966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.