| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2808135 = | NA (NA) | 4 (0.030) | 4/164 | NT | NA | noncoding (5/84 nt) | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2808165 = | NA (NA) | noncoding (35/84 nt) | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GATTGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2808240‑2808135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCA > NC_000913/2808165‑2808263 atcTGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTA < 2:2538582/97‑1 taGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATC > 2:2495627/3‑100 TTGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATC < 2:3608327/100‑1 TGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCC < 2:3248751/100‑1 TGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCC > 2:2030789/1‑100 TGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCC > 2:147542/1‑100 GTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTAagat > 1:2538568/1‑96 GTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCG > 2:2678307/1‑100 TTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGC > 2:3242038/1‑100 TGAAATGTGCGCTGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCn < 2:1433967/100‑2 TGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC < 2:1769858/100‑1 TGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC < 2:781021/100‑1 TGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC > 2:3081423/1‑100 TGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC > 1:3076937/1‑100 TGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAAAACGGCGGATGCGGCAAAAACGCCTTATCCGCC > 1:2431473/1‑100 CACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGC > 1:2528961/1‑100 GAACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAT > 1:651154/1‑100 AACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGCTGCGACGCTGGCGCGTCTTATCATGCCTACAACCCACATCGCACATT > 2:398793/1‑100 ACGGCGGATGCGGCAAAAACGCCTTATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTGTCATGCCTAGAAACGACATCGGACGTTT > 1:179790/1‑100 ATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATAT > 2:2596232/1‑100 TCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATT > 2:699456/1‑100 CCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTC > 1:1911957/1‑100 CGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCA > 2:1506974/1‑100 CGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCA > 1:2901358/1‑100 CGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCA < 1:2299310/100‑1 CGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCA > 2:533608/1‑100 CCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATC < 1:786261/100‑1 CCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATC < 1:2775312/100‑1 CGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCA < 2:3238878/100‑1 GATTGTTGAAATGTGCGATGTGGTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATTGTGCACAGAACGGCGGATGCGGCAAAAACGCCTTATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2808240‑2808135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCA > NC_000913/2808165‑2808263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |