New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2808135 =NA (NA)4 (0.030) 4/164 NT NA noncoding (5/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2808165 = NA (NA)noncoding (35/84 nt) REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 163 total aligned reads displayed.

AGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAA  >  NC_000913/2808067‑2808264
                                                                                                  |                                                                                                   
aaacgtccgatgtcgtttctaggcatgacaagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                    >  1:179790‑M1/69‑100 (MQ=255)
aGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGt                                                                                                    >  2:3273140/1‑100 (MQ=255)
 aatgtgcgatgtgggttgtaggcatgataagacgcgccagcgtcgcagcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGtt                                                                                                   >  2:398793‑M1/68‑100 (MQ=255)
  atgtgcgatgtggtttgtaggcatgataagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTc                                                                                                  >  1:651154‑M1/67‑100 (MQ=255)
    caccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtg                                                                                                <  1:2539082/100‑1 (MQ=255)
    caccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtg                                                                                                >  1:2257098/1‑100 (MQ=255)
      gcgatgtggtttgtaggcatgataagacgcgccagcgtcgcatcaggcattgtgcacagaacGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtgtg                                                                                              >  1:2528961‑M1/63‑100 (MQ=255)
      ccaGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCtgtg                                                                                              <  1:1072057/100‑1 (MQ=255)
       cagcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGc                                                                                             <  2:1476878/100‑1 (MQ=255)
        agcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGca                                                                                            >  2:1515198/1‑100 (MQ=255)
        agcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGca                                                                                            <  1:3225046/100‑1 (MQ=255)
         gcagcagTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGcac                                                                                           >  1:3557668/1‑100 (MQ=255)
         gcagcagGTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGTCGTTCTGTGcac                                                                                           <  2:1795791/100‑1 (MQ=255)
              agTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGc                                                                                      >  2:284000/1‑100 (MQ=255)
              agTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGc                                                                                      >  2:126964/1‑100 (MQ=255)
               gTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGcc                                                                                     >  1:2142563/1‑100 (MQ=255)
               gTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGcc                                                                                     <  1:3516361/100‑1 (MQ=255)
               gTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGcc                                                                                     >  2:1676131/1‑100 (MQ=255)
               gTTCGATGGCTGAGTGAATGACGCGCTCCCCGCGTACAGTTAATTTTTATTCGTGCGGCTAACGCGTTTTGGCCGTATCCGCCGTTCTGTGCACAATccc                                                                                     <  1:2197379/100‑1 (MQ=255)
                  cGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtga                                                                                  <  2:869363‑M1/100‑4 (MQ=255)
                  cGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtga                                                                                  >  1:2678292‑M1/1‑97 (MQ=255)
                     tGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCTGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGc                                                                               >  1:2046699/1‑100 (MQ=255)
                      ggCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCg                                                                              >  2:1420956/1‑100 (MQ=255)
                       gCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCCTCCGCCGTTCTGTGCACAATGCCTGATGCg                                                                              >  1:3191356/1‑99 (MQ=255)
                        cTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGAc                                                                            >  2:3019164/1‑100 (MQ=255)
                        cTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGAc                                                                            >  2:2955207/1‑100 (MQ=255)
                          gggTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGACTGATGCGAc                                                                            <  1:3062212/98‑1 (MQ=255)
                             tGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTgg                                                                       >  1:834433/1‑100 (MQ=255)
                              gAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgc                                                                      <  2:2343703/100‑1 (MQ=255)
                               acttctgcgcTGCCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGgcg                                                                     >  1:2946992/7‑100 (MQ=255)
                                aTGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGCTAAGGCGTTTTTGCCGACACCGCCCTCCTGTGCACAATGCCTGATGCGACGATGgcgc                                                                    >  1:2059367/1‑100 (MQ=255)
                                    ggCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCt                                                                >  2:1791241/1‑100 (MQ=255)
                                      cgcTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTA                                                              <  2:785757‑M2/100‑1 (MQ=255)
                                          ggCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCAt                                                          <  2:759307/100‑1 (MQ=255)
                                          ggCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCAt                                                          >  2:1713717/1‑100 (MQ=255)
                                           gCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgatgcgacgcgccagcgtcgcatcagg                                                         <  2:1921201‑M1/100‑29 (MQ=255)
                                           gCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgatgcgacgcgccagcgtcgcatcagg                                                         <  2:253998‑M1/100‑29 (MQ=255)
                                           gCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATg                                                         >  2:164553/1‑100 (MQ=255)
                                            cAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                        >  2:670846/1‑100 (MQ=255)
                                             aGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                       <  2:1033856/100‑1 (MQ=255)
                                             aGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                       <  2:1576034/100‑1 (MQ=255)
                                              gcgcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgataagacgcgccagcgtcgcatcaggcat                                                      <  1:3310687‑M1/100‑32 (MQ=255)
                                              gcgcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCt                                                      >  1:3014795/1‑100 (MQ=255)
                                                gcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                    <  1:1993483/100‑1 (MQ=255)
                                                gcAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                    <  2:2806218/100‑1 (MQ=255)
                                                  aGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCtgataagacgcgccagcgtcgcatcaggcattgtg                                                  <  1:2969118‑M1/100‑36 (MQ=255)
                                                     aGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAcc                                               <  1:231508/100‑1 (MQ=255)
                                                     aGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAcc                                               <  1:2863296/100‑1 (MQ=255)
                                                      gTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACca                                              >  2:3256301/1‑100 (MQ=255)
                                                      gTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACca                                              <  2:1001313/100‑1 (MQ=255)
                                                      gTAATTTTGATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATCCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAAcc                                               <  1:2568207/99‑1 (MQ=255)
                                                          tttttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATc                                          >  1:333211/1‑100 (MQ=255)
                                                           ttttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCg                                         <  2:1133163/100‑1 (MQ=255)
                                                            tttATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGc                                        <  1:3533246/100‑1 (MQ=255)
                                                              tATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac                                      >  1:1624772/1‑100 (MQ=255)
                                                              tATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcac                                      <  1:1676124/100‑1 (MQ=255)
                                                               aTTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGcaca                                     >  2:2990720/1‑100 (MQ=255)
                                                                gaacggcggatgcggcaaaaacgccttatccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAt                                    >  1:651154‑M2/35‑100 (MQ=255)
                                                                  ngggCGGATAAGGCGTTTTTGCCGCATACGCCGTTCTGTGCACAATGCCTGATGCCACGCTGGCGCGTCTTATCATACCTACAAACCACATCTCACAttt                                  >  1:892230/2‑100 (MQ=25)
                                                                  cGGGCGGATAAGGCGTTTTTGCTTCATTTGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  1:1913184/1‑100 (MQ=37)
                                                                  cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  1:1235409/1‑100 (MQ=255)
                                                                  cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  2:3414917/1‑100 (MQ=255)
                                                                  cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  1:3467404/1‑100 (MQ=255)
                                                                  cGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACAttt                                  >  2:2299323/1‑100 (MQ=255)
                                                                   gggCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTc                                 <  1:471885/100‑1 (MQ=255)
                                                                    nGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACAGCGCACATTTca                                <  2:1433967‑M1/99‑1 (MQ=255)
                                                                    GGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTTTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                                >  1:2431473‑M1/1‑100 (MQ=255)
                                                                    GGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                                >  2:3081423‑M1/1‑100 (MQ=255)
                                                                    GGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTca                                >  1:3076937‑M1/1‑100 (MQ=255)
                                                                     GCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaa                               >  2:3242038‑M1/1‑100 (MQ=255)
                                                                      CGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaac                              >  2:2678307‑M1/1‑100 (MQ=255)
                                                                       GGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaaca                             >  2:2030789‑M1/1‑100 (MQ=255)
                                                                       GGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTcaaca                             >  2:147542‑M1/1‑100 (MQ=255)
                                                                        GATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATttcaacta                            >  2:2495627‑M1/1‑98 (MQ=255)
                                                                           aaGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatct                         >  1:510661/1‑100 (MQ=255)
                                                                           aaGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatct                         >  2:3198325/1‑100 (MQ=255)
                                                                             ggCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatttat                       >  1:1833055/1‑100 (MQ=255)
                                                                             ggCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                       >  1:1839604/1‑100 (MQ=255)
                                                                             ggCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctat                       >  2:3387829/1‑100 (MQ=255)
                                                                              gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatc                      <  2:2387274/100‑1 (MQ=255)
                                                                              gCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAatctatc                      >  2:1570224/1‑100 (MQ=255)
                                                                                gTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCtt                    <  1:58286/100‑1 (MQ=255)
                                                                                gTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCtt                    <  1:253327/100‑1 (MQ=255)
                                                                                  ttttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTc                  <  2:1203707/100‑1 (MQ=255)
                                                                                  ttttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTc                  <  1:3273115/100‑1 (MQ=255)
                                                                                   tttGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCa                 >  2:816086/1‑100 (MQ=255)
                                                                                     tGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCAt                <  1:1995424/99‑1 (MQ=255)
                                                                                      gCCGCATCCGCCGTTCTGTGCACAATCCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCACATCGCACATTTCAACAATCTATTTTTCATcc              >  2:2228906/1‑100 (MQ=255)
                                                                                       ccGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATccc             <  2:2071512/100‑1 (MQ=255)
                                                                                       ccGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATccc             <  2:1237037/100‑1 (MQ=255)
                                                                                        cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa            >  1:2190039/1‑100 (MQ=255)
                                                                                        cGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCa            <  2:3699376/100‑1 (MQ=255)
                                                                                         gCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCat           <  2:2565812/100‑1 (MQ=255)
                                                                                           atccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCatat         >  2:2596232‑M2/8‑100 (MQ=255)
                                                                                            tccgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATAtt        >  2:699456‑M2/7‑100 (MQ=255)
                                                                                              cgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtca      <  1:2299310‑M2/96‑1 (MQ=255)
                                                                                              cgccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtca      >  2:533608‑M2/5‑100 (MQ=255)
                                                                                                ccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcatc    <  1:2775312‑M2/98‑1 (MQ=255)
                                                                                                ccGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATtcatc    <  1:786261‑M2/98‑1 (MQ=255)
                                                                                                  gTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCaa  <  2:3262674/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
AGCCCACCAGCAGCAGTTCGATGGCTGGGTGAATGAGGCGCTGGCAGCGCAGAAGTAATTTTTATTCGGGCGGATAAGGCGTTTTTGCCGCATCCGCCGTTCTGTGCACAATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACCACATCGCACATTTCAACAATCTATCTTTCATCCCATATTCATCAA  >  NC_000913/2808067‑2808264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.