| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2406375 | 107 (0.870) | 19 (0.180) | 13/156 | NT | 16.1% | coding (267/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | NC_000913 | = 2406380 | 104 (0.960) | coding (262/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
GATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2406266‑2406375‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaatgatgagGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTAAATC < NC_000913/2406380‑2406284 GATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGGAGATTACTGAACAT > 2:766511/1‑100GATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACAT > 1:2043505/1‑100 TAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTA > 2:2189715/1‑100 AACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAAT < 1:3350549/100‑1 AACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAAT > 1:2843454/1‑100 AACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAAT > 1:2922813/1‑100 ACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATG > 2:2836070/1‑100 ACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATG < 1:460732/100‑1 ACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATG < 1:922985/100‑1 CGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCATATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGAT < 1:2189703/100‑1 AACTCACGCGATTTAACAGGAAAGGTAAGATCGTATTGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGA < 1:1886512/100‑1 ACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAACATTACTGAACATTAATGATGAG < 1:1988497/100‑1 CACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCC > 2:2959601/1‑100 TAACAGGAAAGGTAAGATCGTATCGGCATATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCA < 1:1527893/100‑1 TAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCA > 1:1206838/1‑100 AACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCAT > 2:185906/1‑100 CAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTA < 1:1947582/100‑1 AGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAA < 2:2225791/100‑1 AGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAA < 2:2225200/100‑1 AGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAA < 2:1525243/100‑1 AGGAAAGGTAAGATCGTATCGGCAGATTCATCTCAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAA < 1:617237/100‑1 GAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAATG < 2:324299/100‑1 GAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAATG < 1:675291/100‑1 GAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAATG < 2:1017161/100‑1 GAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAATG < 2:1238100/100‑1 GAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAATG < 1:1273553/100‑1 AAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACGGATAGCTAAGACGCCCTGAAGATTACTGAACATTAATGATGAGGCCTG‑CTCATCATTAATGT < 1:2181693/100‑1 CTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGA‑GCAGGCCTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTAT > 1:2959584/1‑100 CACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGC‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGC > 1:2346358/1‑100 GTTAATACGCCCTGAAGATTACTGAACATTAATGATGAGCAGGC‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATG > 2:1206842/1‑100 CCTGAAGATTACTGAACATTAATGATGA‑GCAGGCCTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGA > 1:2863845/1‑100 ACTGAACATTAATGATGAGCAGGC‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTT > 1:3282258/1‑99 GAACATTAATGATGAGCAGGC‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCT > 1:2021411/1‑100 ACATTAATGATGA‑GCAGGCCTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTT > 1:2630820/1‑100 ACATTAATGATGA‑GCAGGCCTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTT > 1:185905/1‑100 TTAATGATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCT > 1:1403380/1‑100 TAATGATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTG < 1:247593/100‑1 TAATGATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTG > 2:399953/1‑100 AATGATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGT < 2:54760/100‑1 ATGATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTACCTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGT > 1:1985239/1‑99 ATGATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTT < 2:553813/100‑1 TGATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTA < 1:2840291/100‑1 TGATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTA < 1:1600392/100‑1 GATGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTAA > 1:1208601/1‑100 TGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTAAAT > 1:1780181/1‑100 TGAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTAAAT > 2:1205305/1‑100 GAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTACCTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTAAATC > 2:1677600/1‑100 GAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTAAATC > 1:1933729/1‑100 GAGGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTAAATC < 1:319871/100‑1 GATAAACCGAACTCACGCGATTTAACAGGAAAGGTAAGATCGTATCGGCAGATTCATCTGAAGCACCGATAGTTAATACGCCCTGAAGATTACTGAACATTAATGATGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2406266‑2406375‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaatgatgagGCCTG‑CTCATCATTAATGTTCAGTAATCTTCAGGGCGTATTAACTATCGGTGCTTCAGATGAATCTGCCGATACGATCTTACCTTTCCTGTTAAATC < NC_000913/2406380‑2406284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |